Wall clock time and date at job start Sun Mar 29 2020 21:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.53004 * 109.47119 * 175.00007 * 4 2 1 6 6 C 1.50696 * 109.47273 * 179.97438 * 5 4 2 7 7 H 1.08008 * 119.99688 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00287 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00188 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99668 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47070 * 89.99966 * 10 8 6 12 12 H 1.48503 * 109.46926 * 209.99698 * 10 8 6 13 13 H 1.48498 * 109.47232 * 329.99797 * 10 8 6 14 14 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 15 15 C 1.46901 * 110.99793 * 275.00325 * 14 2 1 16 16 C 1.50701 * 109.46921 * 179.97438 * 15 14 2 17 17 C 1.38233 * 120.00099 * 269.72682 * 16 15 14 18 18 C 1.38239 * 119.99655 * 179.76882 * 17 16 15 19 19 C 1.38230 * 120.00228 * 0.50243 * 18 17 16 20 20 C 1.38238 * 119.99995 * 359.75228 * 19 18 17 21 21 C 1.38238 * 120.00072 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 24 24 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 25 25 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 26 26 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 27 27 H 1.08999 * 109.47179 * 300.00188 * 5 4 2 28 28 H 1.09004 * 109.46918 * 59.99924 * 5 4 2 29 29 H 0.97003 * 119.99554 * 180.02562 * 9 8 6 30 30 H 1.00898 * 110.99995 * 38.95403 * 14 2 1 31 31 H 1.09002 * 109.47401 * 59.99808 * 15 14 2 32 32 H 1.09001 * 109.46874 * 299.99821 * 15 14 2 33 33 H 1.08003 * 119.99927 * 359.97438 * 17 16 15 34 34 H 1.08000 * 119.99431 * 180.23215 * 18 17 16 35 35 H 1.07997 * 120.00220 * 179.73036 * 19 18 17 36 36 H 1.08002 * 119.99952 * 179.97438 * 20 19 18 37 37 H 1.07991 * 120.00062 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0673 -1.3243 -2.5437 7 1 3.3687 -1.8047 -3.2129 8 6 5.4185 -1.3605 -2.8155 9 7 5.8570 -1.9814 -3.8887 10 14 6.6265 -0.5289 -1.6584 11 1 7.0621 -1.4959 -0.6190 12 1 7.8083 -0.0633 -2.4277 13 1 5.9694 0.6336 -1.0087 14 7 2.0196 -0.6925 1.1995 15 6 2.0823 0.2227 2.3469 16 6 2.5872 -0.5217 3.5561 17 6 1.6938 -1.1471 4.4055 18 6 2.1573 -1.8339 5.5121 19 6 3.5134 -1.8866 5.7748 20 6 4.4065 -1.2567 4.9282 21 6 3.9434 -0.5746 3.8186 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 3.8532 0.4369 -1.3573 28 1 3.9994 -1.0728 -0.4259 29 1 6.8077 -2.0072 -4.0796 30 1 1.4495 -1.4979 1.4101 31 1 1.0869 0.6164 2.5525 32 1 2.7587 1.0463 2.1182 33 1 0.6339 -1.1019 4.2029 34 1 1.4596 -2.3257 6.1736 35 1 3.8752 -2.4195 6.6417 36 1 5.4660 -1.2975 5.1338 37 1 4.6410 -0.0822 3.1575 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:03 Heat of formation + Delta-G solvation = -12.991419 kcal Electronic energy + Delta-G solvation = -15835.782716 eV Core-core repulsion = 13383.191549 eV Total energy + Delta-G solvation = -2452.591167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.21022 -38.38723 -35.37946 -33.94249 -31.98587 -31.72836 -30.04270 -27.14605 -25.81342 -23.42710 -22.81884 -22.03766 -21.35105 -18.83395 -17.69206 -16.61726 -16.42297 -16.26460 -16.11222 -15.36833 -14.90216 -14.60370 -14.38820 -14.21292 -13.96364 -13.68176 -13.42449 -13.24085 -13.03060 -12.87196 -12.66921 -11.97307 -11.90607 -11.83794 -11.65396 -11.49764 -11.33187 -11.10759 -10.72192 -9.78062 -9.67342 -9.13494 -8.26877 -6.28571 0.46567 0.54665 1.35494 1.37037 1.50155 2.38493 2.85873 3.09576 3.48777 3.90951 3.99969 4.04436 4.20139 4.30322 4.32841 4.41661 4.48403 4.64693 4.71822 4.74486 4.82190 4.92853 5.01095 5.04598 5.16104 5.20624 5.25332 5.37989 5.59560 5.60268 5.65746 5.70375 5.76736 5.77493 6.14671 6.25139 6.34556 6.59144 6.80092 7.35792 8.90426 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.006645 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.409026 B = 4212.565220 C = 5207.152574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 H 0.071 0.929 4 C -0.085 4.085 5 C 0.002 3.998 6 C -0.529 4.529 7 H 0.028 0.972 8 C 0.002 3.998 9 N -0.956 5.956 10 Si 0.952 3.048 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.250 1.250 14 N -0.688 5.688 15 C 0.103 3.897 16 C -0.091 4.091 17 C -0.121 4.121 18 C -0.126 4.126 19 C -0.128 4.128 20 C -0.133 4.133 21 C -0.122 4.122 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.006 0.994 28 H 0.023 0.977 29 H 0.264 0.736 30 H 0.343 0.657 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.415 4.445 21.167 23.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 H 0.089 0.911 4 C -0.123 4.123 5 C -0.036 4.036 6 C -0.567 4.567 7 H 0.047 0.953 8 C -0.194 4.194 9 N -0.597 5.597 10 Si 0.776 3.224 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.173 1.173 14 N -0.320 5.320 15 C -0.026 4.026 16 C -0.092 4.092 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.146 4.146 20 C -0.151 4.151 21 C -0.140 4.140 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.025 0.975 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.162 0.838 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.613 4.504 20.898 23.048 hybrid contribution 0.015 0.092 -0.152 0.179 sum -8.598 4.595 20.746 22.922 Atomic orbital electron populations 1.22389 0.95479 1.02416 1.02628 1.21559 0.93462 0.97291 0.89691 0.91058 1.21346 0.95855 0.99235 0.95879 1.19358 0.94687 0.95016 0.94500 1.21665 0.92587 1.33800 1.08678 0.95325 1.25998 1.00671 0.95833 0.96864 1.70084 1.15112 1.45783 1.28747 0.85621 0.77890 0.80010 0.78845 1.19530 1.20994 1.17317 1.60473 1.58537 1.09785 1.03192 1.20870 0.99831 0.94246 0.87610 1.19931 0.93799 0.99272 0.96166 1.21277 0.99952 0.97669 0.95008 1.21445 0.96158 0.99090 0.97685 1.21464 0.93627 0.99458 1.00077 1.21407 1.00725 0.97962 0.94997 1.21223 0.95551 0.99797 0.97477 0.92257 0.91492 0.91749 0.93816 0.93201 0.97529 0.95845 0.92677 0.83793 0.92855 0.91304 0.84697 0.83757 0.84008 0.85016 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 9.16 71.98 0.66 -3.25 16 2 C 0.09 2.70 2.59 44.91 0.12 2.81 16 3 H 0.07 2.17 7.80 -2.39 -0.02 2.15 16 4 C -0.08 -3.40 4.83 30.60 0.15 -3.26 16 5 C 0.00 0.09 3.93 29.85 0.12 0.21 16 6 C -0.53 -32.14 9.66 25.60 0.25 -31.90 16 7 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 8 C 0.00 0.13 5.47 84.65 0.46 0.60 16 9 N -0.96 -62.41 13.96 21.45 0.30 -62.11 16 10 Si 0.95 47.10 27.47 68.60 1.88 48.99 16 11 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 13 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 14 N -0.69 -20.15 5.69 -495.56 -2.82 -22.97 16 15 C 0.10 2.53 5.61 85.56 0.48 3.01 16 16 C -0.09 -2.24 5.39 -19.86 -0.11 -2.35 16 17 C -0.12 -2.46 9.70 22.27 0.22 -2.24 16 18 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 19 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 20 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 21 C -0.12 -3.20 9.70 22.27 0.22 -2.98 16 22 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 23 H 0.07 1.27 7.45 -2.39 -0.02 1.25 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.01 0.32 7.20 -2.39 -0.02 0.30 16 28 H 0.02 1.17 7.18 -2.39 -0.02 1.15 16 29 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 30 H 0.34 9.28 8.46 -89.70 -0.76 8.52 16 31 H 0.05 1.09 7.38 -2.39 -0.02 1.07 16 32 H 0.07 1.80 8.00 -2.39 -0.02 1.78 16 33 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 34 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 36 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.11 3.08 8.06 -2.92 -0.02 3.06 16 Total: -1.00 -70.10 306.67 2.80 -67.30 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.21 Total: 15.24 kcal Atomic # 6 Polarization: -49.67 SS G_CDS: 3.23 Total: -46.44 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -2.52 Total: -85.08 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.88 Total: 48.99 kcal Total: -70.10 2.80 -67.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.304 kcal (2) G-P(sol) polarization free energy of solvation -70.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds