Wall clock time and date at job start Sun Mar 29 2020 22:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53938 * 113.74184 * 278.73847 * 9 7 2 11 11 N 1.47813 * 86.03931 * 222.08648 * 10 9 7 12 12 S 1.65596 * 134.45968 * 204.64416 * 11 10 9 13 13 O 1.42102 * 104.27495 * 25.93883 * 12 11 10 14 14 O 1.42100 * 104.27612 * 153.79670 * 12 11 10 15 15 C 1.81393 * 104.45231 * 269.86716 * 12 11 10 16 16 C 1.53003 * 109.47501 * 180.02562 * 15 12 11 17 17 N 1.46897 * 109.47281 * 179.97438 * 16 15 12 18 18 C 1.47586 * 91.04834 * 24.55241 * 11 10 9 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 112.94525 * 50.33174 * 9 7 2 21 21 H 1.09002 * 113.76959 * 336.35006 * 10 9 7 22 22 H 1.08998 * 113.76918 * 107.75067 * 10 9 7 23 23 H 1.09003 * 109.47308 * 300.00246 * 15 12 11 24 24 H 1.09002 * 109.47203 * 60.00005 * 15 12 11 25 25 H 1.08998 * 109.46608 * 300.00175 * 16 15 12 26 26 H 1.09002 * 109.46913 * 59.99796 * 16 15 12 27 27 H 1.00900 * 110.99753 * 179.97438 * 17 16 15 28 28 H 1.00899 * 110.99921 * 303.95800 * 17 16 15 29 29 H 1.09008 * 113.76654 * 221.15420 * 18 11 10 30 30 H 1.08993 * 113.87299 * 89.76897 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 0.7552 -2.9298 1.3906 11 7 1.1912 -4.2905 1.0121 12 16 0.7617 -5.8189 1.4828 13 8 -0.5764 -5.6815 1.9408 14 8 1.0717 -6.6317 0.3592 15 6 1.8726 -6.1954 2.8665 16 6 1.5714 -7.5993 3.3950 17 7 2.4714 -7.9044 4.5152 18 6 2.1609 -3.7401 0.0451 19 1 -0.4849 0.8400 0.0004 20 1 0.4839 -2.5462 -0.7747 21 1 1.3259 -2.4984 2.2130 22 1 -0.3225 -2.8333 1.5223 23 1 2.9067 -6.1503 2.5249 24 1 1.7209 -5.4667 3.6629 25 1 0.5373 -7.6448 3.7365 26 1 1.7234 -8.3277 2.5985 27 1 2.2919 -8.8269 4.8823 28 1 3.4372 -7.8058 4.2402 29 1 2.2033 -4.2895 -0.8954 30 1 3.1460 -3.5469 0.4697 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238922737.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:34 Heat of formation + Delta-G solvation = -67.786551 kcal Electronic energy + Delta-G solvation = -14846.446318 eV Core-core repulsion = 12189.830907 eV Total energy + Delta-G solvation = -2656.615411 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.66224 -38.17430 -37.06342 -36.48979 -34.53133 -30.50158 -29.99545 -26.78400 -26.35039 -23.63846 -21.46337 -19.69541 -18.78699 -18.32003 -17.69836 -17.35043 -16.49350 -16.45631 -15.81878 -15.52806 -15.02955 -14.63837 -14.42365 -13.54949 -13.42111 -13.29140 -13.19905 -13.14231 -13.03657 -12.74945 -12.67527 -12.30040 -12.11971 -11.92528 -11.03779 -10.88563 -10.51424 -9.81130 -9.76067 -8.09778 -6.21400 -0.78286 1.51696 1.52276 1.59729 1.62755 2.49558 2.84083 3.02052 3.22604 3.49231 3.63915 3.79921 4.06705 4.26244 4.44607 4.48183 4.65936 4.73384 4.79686 4.82935 5.12813 5.17034 5.66628 5.89507 5.92067 6.02845 6.30877 6.49975 6.88354 7.48139 8.99939 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.047004 B = 0.006168 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.546067 B = 4538.357855 C = 4714.130151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.014 3.986 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.074 0.926 9 C 0.016 3.984 10 C 0.137 3.863 11 N -1.040 6.040 12 S 2.628 3.372 13 O -0.996 6.996 14 O -0.990 6.990 15 C -0.611 4.611 16 C 0.064 3.936 17 N -0.846 5.846 18 C 0.132 3.868 19 H 0.262 0.738 20 H 0.027 0.973 21 H 0.085 0.915 22 H 0.045 0.955 23 H 0.152 0.848 24 H 0.146 0.854 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.359 0.641 28 H 0.354 0.646 29 H 0.071 0.929 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.187 -11.564 6.881 15.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.092 0.908 9 C -0.005 4.005 10 C 0.011 3.989 11 N -0.879 5.879 12 S 2.727 3.273 13 O -0.987 6.987 14 O -0.981 6.981 15 C -0.744 4.744 16 C -0.069 4.069 17 N -0.380 5.380 18 C 0.007 3.993 19 H 0.071 0.929 20 H 0.045 0.955 21 H 0.103 0.897 22 H 0.064 0.936 23 H 0.170 0.830 24 H 0.164 0.836 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.174 0.826 28 H 0.167 0.833 29 H 0.090 0.910 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.926 -11.612 6.914 14.757 hybrid contribution 0.742 0.349 -0.236 0.853 sum 6.668 -11.263 6.678 14.695 Atomic orbital electron populations 1.70093 1.07685 1.27731 1.50830 1.25840 0.95488 1.02776 0.94409 0.85587 0.78192 0.78608 0.79079 1.19529 1.21851 1.19063 1.21384 0.93606 0.90574 1.50893 0.90828 1.20510 0.94541 0.92545 0.92917 1.23001 0.98238 0.76615 1.00998 1.60177 1.53872 1.19741 1.54103 1.04240 0.75215 0.71879 0.75965 1.93516 1.35638 1.85603 1.83915 1.93505 1.86254 1.68372 1.49932 1.30603 1.17805 1.07121 1.18840 1.21489 0.99321 0.91794 0.94278 1.58625 1.08812 1.36419 1.34127 1.23002 0.93168 0.92600 0.90544 0.92886 0.95521 0.89676 0.93640 0.82976 0.83581 0.89744 0.92910 0.82640 0.83260 0.91036 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.23 13.29 21.45 0.28 -51.94 16 2 C 0.01 0.75 5.46 84.66 0.46 1.21 16 3 Si 0.96 40.87 29.54 68.60 2.03 42.89 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.53 -26.34 8.77 25.60 0.22 -26.12 16 8 H 0.07 3.44 7.81 -2.91 -0.02 3.41 16 9 C 0.02 0.78 3.60 -10.88 -0.04 0.74 16 10 C 0.14 5.94 8.48 86.44 0.73 6.67 16 11 N -1.04 -38.91 4.00 -529.18 -2.12 -41.02 16 12 S 2.63 86.76 5.93 -56.49 -0.34 86.42 16 13 O -1.00 -40.26 18.02 -127.65 -2.30 -42.56 16 14 O -0.99 -37.16 18.02 -127.65 -2.30 -39.46 16 15 C -0.61 -13.53 6.44 71.98 0.46 -13.06 16 16 C 0.06 1.26 6.79 86.30 0.59 1.85 16 17 N -0.85 -13.46 9.62 -186.72 -1.80 -15.26 16 18 C 0.13 4.92 8.47 86.49 0.73 5.65 16 19 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 20 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.09 3.41 8.09 -2.39 -0.02 3.39 16 22 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.15 2.67 8.14 -2.39 -0.02 2.65 16 24 H 0.15 3.13 8.14 -2.39 -0.02 3.11 16 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 27 H 0.36 4.13 9.08 -89.69 -0.81 3.31 16 28 H 0.35 4.48 8.99 -89.69 -0.81 3.68 16 29 H 0.07 2.55 8.14 -2.38 -0.02 2.54 16 30 H 0.10 3.16 8.09 -2.39 -0.02 3.14 16 Total: -1.00 -67.77 275.13 -3.84 -71.61 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -0.47 Total: 12.37 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 3.16 Total: -23.06 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -3.63 Total: -108.23 kcal Atomic # 8 Polarization: -77.42 SS G_CDS: -4.60 Total: -82.02 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 86.76 SS G_CDS: -0.34 Total: 86.42 kcal Total: -67.77 -3.84 -71.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238922737.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.825 kcal (2) G-P(sol) polarization free energy of solvation -67.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds