Wall clock time and date at job start Sun Mar 29 2020 22:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99779 * 2 1 4 4 H 1.48498 * 109.46586 * 239.99736 * 3 2 1 5 5 H 1.48500 * 109.46909 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47075 * 119.99616 * 3 2 1 7 7 C 1.37871 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00584 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47344 * 179.97438 * 9 7 2 11 11 N 1.40060 * 125.97433 * 89.97999 * 10 9 7 12 12 C 1.31568 * 108.28710 * 179.97438 * 11 10 9 13 13 C 1.48492 * 125.93917 * 180.02562 * 12 11 10 14 14 C 1.46683 * 127.10652 * 5.03701 * 13 12 11 15 15 C 1.34395 * 106.02866 * 179.97438 * 14 13 12 16 16 O 1.34151 * 108.97817 * 0.02562 * 15 14 13 17 17 C 1.34123 * 110.73193 * 359.97438 * 16 15 14 18 18 C 1.40761 * 108.11816 * 0.26102 * 12 11 10 19 19 C 1.35746 * 107.79914 * 359.56937 * 18 12 11 20 20 O 1.35762 * 126.12459 * 180.12479 * 19 18 12 21 21 H 0.97000 * 120.00091 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46914 * 60.00363 * 9 7 2 23 23 H 1.09001 * 109.47440 * 300.00301 * 9 7 2 24 24 H 1.08000 * 126.98762 * 359.97438 * 14 13 12 25 25 H 1.08003 * 125.50523 * 180.02562 * 15 14 13 26 26 H 1.07997 * 125.76551 * 180.26840 * 17 16 15 27 27 H 1.08002 * 126.09817 * 179.73592 * 18 12 11 28 28 H 0.96703 * 113.99158 * 270.35369 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 7 2.7381 -4.2377 1.1340 12 6 3.5521 -5.1909 0.7343 13 6 4.3288 -6.0999 1.6149 14 6 4.2648 -6.1827 3.0780 15 6 5.1379 -7.1404 3.4340 16 8 5.7161 -7.6360 2.3296 17 6 5.2445 -7.0260 1.2322 18 6 3.5630 -5.1955 -0.6733 19 6 2.7207 -4.2194 -1.0980 20 8 2.4496 -3.9024 -2.3899 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6240 -2.5568 0.8902 24 1 3.6425 -5.5938 3.7356 25 1 5.3412 -7.4593 4.4457 26 1 5.5400 -7.2388 0.2155 27 1 4.1369 -5.8593 -1.3030 28 1 3.0430 -3.2370 -2.7644 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245938454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:14 Heat of formation + Delta-G solvation = 21.495638 kcal Electronic energy + Delta-G solvation = -15437.178160 eV Core-core repulsion = 12648.990363 eV Total energy + Delta-G solvation = -2788.187796 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.21518 -42.01640 -38.11752 -35.87723 -34.38408 -32.77814 -30.69585 -30.11918 -28.67131 -25.40854 -23.40036 -22.69074 -21.58210 -20.62072 -19.40457 -18.78099 -17.86568 -17.31713 -16.80447 -16.50033 -15.88007 -15.68358 -15.05654 -14.94576 -14.26344 -13.96726 -13.72250 -13.67957 -13.19751 -13.14056 -12.73082 -12.57067 -12.20139 -12.02275 -11.35169 -11.10316 -10.78196 -9.99173 -9.59654 -9.14498 -8.38059 -6.57616 0.54156 0.98360 1.29292 1.35882 1.38587 1.47090 1.62271 2.26652 2.30247 2.41259 2.91987 3.11180 3.62501 3.87818 4.23938 4.28663 4.56323 4.68908 4.82657 4.85604 4.91789 5.16844 5.33302 5.44517 5.48116 5.69745 5.73039 5.84304 6.22272 6.47256 6.73613 6.87624 7.14584 8.68982 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.033541 B = 0.005974 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.609387 B = 4685.881674 C = 5099.875126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.558 4.558 8 H 0.055 0.945 9 C 0.271 3.729 10 N -0.363 5.363 11 N -0.315 5.315 12 C 0.127 3.873 13 C -0.148 4.148 14 C -0.228 4.228 15 C -0.019 4.019 16 O -0.180 6.180 17 C 0.016 3.984 18 C -0.283 4.283 19 C 0.253 3.747 20 O -0.471 6.471 21 H 0.274 0.726 22 H 0.041 0.959 23 H 0.022 0.978 24 H 0.141 0.859 25 H 0.247 0.753 26 H 0.245 0.755 27 H 0.187 0.813 28 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.413 -11.881 0.617 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.596 4.596 8 H 0.074 0.926 9 C 0.152 3.848 10 N -0.154 5.154 11 N -0.143 5.143 12 C -0.035 4.035 13 C -0.152 4.152 14 C -0.247 4.247 15 C -0.085 4.085 16 O -0.075 6.075 17 C -0.054 4.054 18 C -0.313 4.313 19 C 0.082 3.918 20 O -0.277 6.277 21 H 0.084 0.916 22 H 0.059 0.941 23 H 0.040 0.960 24 H 0.159 0.841 25 H 0.263 0.737 26 H 0.261 0.739 27 H 0.205 0.795 28 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 10.364 -11.658 1.538 15.675 hybrid contribution 0.082 1.445 -0.700 1.608 sum 10.446 -10.214 0.838 14.634 Atomic orbital electron populations 1.70022 1.07609 1.29112 1.49044 1.25860 0.95857 1.03070 0.93376 0.85302 0.78206 0.77138 0.79217 1.18542 1.19840 1.19893 1.21405 0.93287 0.90727 1.54204 0.92643 1.19196 0.86530 0.81386 0.97706 1.49870 1.35359 1.26948 1.03205 1.77551 1.16301 1.12161 1.08271 1.19971 0.96509 0.94540 0.92475 1.19391 1.02319 1.00668 0.92793 1.23011 1.04609 1.03343 0.93771 1.24510 0.95791 0.96556 0.91657 1.83927 1.55442 1.53594 1.14549 1.24530 0.95528 0.93401 0.91964 1.21280 1.08734 1.07403 0.93864 1.19218 0.96254 0.95092 0.81242 1.84731 1.61106 1.63488 1.18337 0.91647 0.94073 0.95979 0.84134 0.73747 0.73883 0.79538 0.72565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.27 13.29 21.45 0.28 -52.98 15 2 C 0.02 1.08 5.46 84.65 0.46 1.54 15 3 Si 0.98 42.95 29.54 68.60 2.03 44.97 15 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 15 5 H -0.27 -11.50 7.11 99.48 0.71 -10.80 15 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 7 C -0.56 -31.67 9.39 25.60 0.24 -31.43 15 8 H 0.06 3.16 7.81 -2.91 -0.02 3.13 15 9 C 0.27 14.98 6.14 85.63 0.53 15.51 15 10 N -0.36 -17.97 3.62 -462.82 -1.67 -19.64 15 11 N -0.31 -15.22 12.60 -48.18 -0.61 -15.82 15 12 C 0.13 5.02 7.15 42.54 0.30 5.32 15 13 C -0.15 -4.68 6.33 -18.91 -0.12 -4.80 15 14 C -0.23 -6.54 11.15 23.60 0.26 -6.28 15 15 C -0.02 -0.39 12.05 66.94 0.81 0.42 15 16 O -0.18 -3.79 10.55 0.71 0.01 -3.78 15 17 C 0.02 0.36 11.87 67.24 0.80 1.15 15 18 C -0.28 -10.00 10.60 22.31 0.24 -9.76 15 19 C 0.25 10.49 7.98 83.51 0.67 11.15 15 20 O -0.47 -16.97 13.58 -90.88 -1.23 -18.20 15 21 H 0.27 14.80 8.31 -92.71 -0.77 14.03 15 22 H 0.04 2.34 8.14 -2.39 -0.02 2.32 15 23 H 0.02 1.33 8.14 -2.39 -0.02 1.31 15 24 H 0.14 4.27 8.06 -2.91 -0.02 4.24 15 25 H 0.25 2.48 8.06 -2.91 -0.02 2.46 15 26 H 0.25 3.31 8.06 -2.91 -0.02 3.28 15 27 H 0.19 4.72 8.06 -2.91 -0.02 4.70 15 28 H 0.42 11.15 9.06 -74.06 -0.67 10.48 15 Total: -1.00 -72.37 266.30 3.51 -68.85 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.52 Total: 13.77 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 4.18 Total: -17.17 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -2.00 Total: -88.45 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -1.23 Total: -21.98 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -72.37 3.51 -68.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245938454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.349 kcal (2) G-P(sol) polarization free energy of solvation -72.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds