Wall clock time and date at job start Sun Mar 29 2020 22:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99714 * 2 1 4 4 H 1.48499 * 109.46970 * 239.99995 * 3 2 1 5 5 H 1.48497 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46943 * 120.00209 * 3 2 1 7 7 C 1.37874 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99695 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00420 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47297 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47297 * 180.02562 * 10 9 7 12 12 C 1.33998 * 124.92461 * 90.04724 * 11 10 9 13 13 C 1.46780 * 106.19125 * 179.97438 * 12 11 10 14 14 C 1.39438 * 134.31355 * 179.97438 * 13 12 11 15 15 C 1.37914 * 119.57829 * 180.02562 * 14 13 12 16 16 F 1.35105 * 119.88567 * 180.02562 * 15 14 13 17 17 C 1.38949 * 120.22535 * 359.97438 * 15 14 13 18 18 C 1.37804 * 120.66642 * 359.97438 * 17 15 14 19 19 C 1.38920 * 119.99282 * 0.04017 * 18 17 15 20 20 O 1.34434 * 124.92522 * 270.02842 * 11 10 9 21 21 H 0.97001 * 120.00453 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47004 * 60.00410 * 9 7 2 23 23 H 1.08999 * 109.47034 * 300.00487 * 9 7 2 24 24 H 1.08997 * 109.46979 * 60.00124 * 10 9 7 25 25 H 1.09000 * 109.47047 * 300.00588 * 10 9 7 26 26 H 1.08002 * 126.90142 * 359.97438 * 12 11 10 27 27 H 1.07998 * 120.20712 * 0.04841 * 14 13 12 28 28 H 1.08005 * 119.66756 * 180.02562 * 17 15 14 29 29 H 1.07996 * 120.00398 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 6 1.1096 -5.6317 -1.1002 13 6 0.4146 -6.8358 -0.6293 14 6 -0.2062 -7.9122 -1.2619 15 6 -0.7820 -8.9086 -0.5018 16 9 -1.3848 -9.9547 -1.1082 17 6 -0.7434 -8.8408 0.8855 18 6 -0.1314 -7.7820 1.5207 19 6 0.4541 -6.7681 0.7730 20 8 1.1063 -5.6338 1.1007 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.8720 -3.6043 0.8894 25 1 2.8721 -3.6042 -0.8905 26 1 1.2787 -5.3399 -2.1262 27 1 -0.2357 -7.9655 -2.3401 28 1 -1.1968 -9.6263 1.4719 29 1 -0.1073 -7.7403 2.5996 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059800.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:34 Heat of formation + Delta-G solvation = -34.758133 kcal Electronic energy + Delta-G solvation = -15107.170040 eV Core-core repulsion = 12296.622935 eV Total energy + Delta-G solvation = -2810.547104 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.88617 -42.23871 -37.56607 -34.32712 -32.71142 -31.49540 -29.92603 -28.47530 -25.40638 -22.97874 -22.21040 -21.42933 -20.36892 -17.64959 -17.36200 -16.61624 -15.98453 -15.90292 -15.39633 -14.67784 -14.49447 -14.22748 -13.60805 -13.14909 -12.90631 -12.60616 -12.45555 -12.14311 -11.81169 -11.29986 -11.03594 -10.89875 -10.72502 -10.13146 -10.06805 -9.67155 -9.27930 -8.44516 -8.36989 -7.93928 -6.08759 -4.13501 0.87626 1.20408 2.61894 2.92347 3.28881 3.33823 3.35728 3.57311 4.13754 4.38394 4.53226 4.72842 4.98448 5.22664 5.27149 5.32250 5.45322 5.76458 5.86850 6.03029 6.05604 6.10391 6.23841 6.33716 6.54293 6.70869 6.80872 7.36822 7.52969 7.64683 7.87722 8.24858 8.92242 9.51262 11.02247 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.060775 B = 0.004465 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.606814 B = 6269.204672 C = 6336.173800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.049 4.049 11 C 0.086 3.914 12 C -0.237 4.237 13 C -0.092 4.092 14 C -0.114 4.114 15 C 0.077 3.923 16 F -0.142 7.142 17 C -0.140 4.140 18 C -0.072 4.072 19 C 0.034 3.966 20 O -0.188 6.188 21 H 0.263 0.737 22 H 0.023 0.977 23 H 0.022 0.978 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.159 0.841 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 -15.362 0.159 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.086 4.086 11 C 0.038 3.962 12 C -0.256 4.256 13 C -0.093 4.093 14 C -0.133 4.133 15 C 0.058 3.942 16 F -0.121 7.121 17 C -0.159 4.159 18 C -0.091 4.091 19 C -0.014 4.014 20 O -0.089 6.089 21 H 0.073 0.927 22 H 0.042 0.958 23 H 0.040 0.960 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.177 0.823 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.185 -15.197 0.410 15.203 hybrid contribution 0.173 0.711 -0.294 0.788 sum 0.358 -14.486 0.116 14.491 Atomic orbital electron populations 1.69957 1.06125 1.27016 1.49949 1.25020 0.94872 0.99392 0.95007 0.86591 0.79532 0.82805 0.78699 1.20125 1.21226 1.20125 1.21105 0.93086 0.90547 1.51827 0.92304 1.19146 0.93619 0.90029 0.98221 1.20766 0.98146 0.86443 1.03263 1.23309 0.95768 0.94298 0.82792 1.22142 1.08082 0.95420 0.99917 1.19742 1.00562 0.96052 0.92949 1.20355 0.99665 0.92790 1.00468 1.17328 0.99448 0.86588 0.90828 1.91480 1.81446 1.55461 1.83678 1.20734 1.02932 0.99723 0.92534 1.19692 0.98339 0.91061 0.99999 1.19662 0.99354 0.88944 0.93432 1.84059 1.60492 1.29502 1.34841 0.92725 0.95815 0.95990 0.90597 0.89171 0.82316 0.84465 0.83910 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 15 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 7 C -0.53 -14.32 9.11 -34.44 -0.31 -14.64 15 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 15 9 C 0.03 0.67 4.96 -27.88 -0.14 0.53 15 10 C -0.05 -0.96 5.66 -27.88 -0.16 -1.12 15 11 C 0.09 1.60 6.49 -35.80 -0.23 1.37 15 12 C -0.24 -4.01 11.01 -37.62 -0.41 -4.42 15 13 C -0.09 -1.49 6.39 -105.16 -0.67 -2.16 15 14 C -0.11 -1.59 10.07 -39.25 -0.40 -1.98 15 15 C 0.08 1.01 7.29 -39.44 -0.29 0.73 15 16 F -0.14 -1.83 17.26 2.25 0.04 -1.79 15 17 C -0.14 -1.64 9.99 -39.48 -0.39 -2.04 15 18 C -0.07 -0.94 10.06 -39.49 -0.40 -1.33 15 19 C 0.03 0.55 7.41 -38.49 -0.29 0.27 15 20 O -0.19 -3.48 10.58 3.73 0.04 -3.44 15 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 22 H 0.02 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 24 H 0.08 1.43 8.14 -51.93 -0.42 1.00 15 25 H 0.09 1.60 8.14 -51.93 -0.42 1.18 15 26 H 0.16 2.37 8.06 -52.49 -0.42 1.95 15 27 H 0.14 1.64 8.06 -52.49 -0.42 1.22 15 28 H 0.14 1.24 8.06 -52.48 -0.42 0.82 15 29 H 0.14 1.44 8.06 -52.49 -0.42 1.01 15 LS Contribution 266.73 15.07 4.02 4.02 Total: -1.00 -29.66 266.73 -6.90 -36.55 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -2.92 Total: -2.52 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -3.79 Total: -23.25 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: 0.04 Total: -3.44 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.66 -6.90 -36.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059800.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.795 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds