Wall clock time and date at job start Sun Mar 29 2020 22:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99714 * 2 1 4 4 H 1.48499 * 109.46970 * 239.99995 * 3 2 1 5 5 H 1.48497 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46943 * 120.00209 * 3 2 1 7 7 C 1.37874 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99695 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00420 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47297 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47297 * 180.02562 * 10 9 7 12 12 C 1.33998 * 124.92461 * 90.04724 * 11 10 9 13 13 C 1.46780 * 106.19125 * 179.97438 * 12 11 10 14 14 C 1.39438 * 134.31355 * 179.97438 * 13 12 11 15 15 C 1.37914 * 119.57829 * 180.02562 * 14 13 12 16 16 F 1.35105 * 119.88567 * 180.02562 * 15 14 13 17 17 C 1.38949 * 120.22535 * 359.97438 * 15 14 13 18 18 C 1.37804 * 120.66642 * 359.97438 * 17 15 14 19 19 C 1.38920 * 119.99282 * 0.04017 * 18 17 15 20 20 O 1.34434 * 124.92522 * 270.02842 * 11 10 9 21 21 H 0.97001 * 120.00453 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47004 * 60.00410 * 9 7 2 23 23 H 1.08999 * 109.47034 * 300.00487 * 9 7 2 24 24 H 1.08997 * 109.46979 * 60.00124 * 10 9 7 25 25 H 1.09000 * 109.47047 * 300.00588 * 10 9 7 26 26 H 1.08002 * 126.90142 * 359.97438 * 12 11 10 27 27 H 1.07998 * 120.20712 * 0.04841 * 14 13 12 28 28 H 1.08005 * 119.66756 * 180.02562 * 17 15 14 29 29 H 1.07996 * 120.00398 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 6 1.1096 -5.6317 -1.1002 13 6 0.4146 -6.8358 -0.6293 14 6 -0.2062 -7.9122 -1.2619 15 6 -0.7820 -8.9086 -0.5018 16 9 -1.3848 -9.9547 -1.1082 17 6 -0.7434 -8.8408 0.8855 18 6 -0.1314 -7.7820 1.5207 19 6 0.4541 -6.7681 0.7730 20 8 1.1063 -5.6338 1.1007 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.8720 -3.6043 0.8894 25 1 2.8721 -3.6042 -0.8905 26 1 1.2787 -5.3399 -2.1262 27 1 -0.2357 -7.9655 -2.3401 28 1 -1.1968 -9.6263 1.4719 29 1 -0.1073 -7.7403 2.5996 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059800.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:34 Heat of formation + Delta-G solvation = -50.371961 kcal Electronic energy + Delta-G solvation = -15107.847106 eV Core-core repulsion = 12296.622935 eV Total energy + Delta-G solvation = -2811.224171 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.91677 -43.49460 -38.68218 -36.13598 -34.30041 -33.04869 -31.04897 -29.97863 -27.14879 -24.33871 -23.56413 -22.81082 -21.81661 -18.83431 -18.69538 -18.34764 -17.26546 -17.16078 -16.55727 -16.41612 -15.88474 -15.37026 -15.07183 -14.43336 -14.32141 -14.08990 -13.84321 -13.62507 -13.20962 -12.87512 -12.79652 -12.54680 -12.09364 -11.86054 -11.76397 -11.33687 -11.09145 -10.57237 -9.50255 -9.20378 -8.21194 -6.34000 -0.23326 0.08555 1.31121 1.43071 1.45846 1.53776 1.69100 2.41659 2.46797 3.03456 3.12697 3.43965 3.62542 3.94513 4.14034 4.16124 4.21941 4.46363 4.65040 4.69783 4.79223 4.90002 4.99355 5.00567 5.16047 5.37859 5.44888 5.50336 5.68565 5.78049 6.14583 6.15731 6.82102 7.36027 8.90557 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.060775 B = 0.004465 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.606814 B = 6269.204672 C = 6336.173800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.033 3.967 10 C -0.034 4.034 11 C 0.053 3.947 12 C -0.227 4.227 13 C -0.116 4.116 14 C -0.117 4.117 15 C 0.076 3.924 16 F -0.138 7.138 17 C -0.121 4.121 18 C -0.074 4.074 19 C 0.010 3.990 20 O -0.207 6.207 21 H 0.264 0.736 22 H -0.002 1.002 23 H -0.013 1.013 24 H 0.080 0.920 25 H 0.109 0.891 26 H 0.174 0.826 27 H 0.154 0.846 28 H 0.182 0.818 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.817 -16.563 0.235 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.090 0.910 9 C -0.004 4.004 10 C -0.071 4.071 11 C 0.006 3.994 12 C -0.246 4.246 13 C -0.117 4.117 14 C -0.136 4.136 15 C 0.057 3.943 16 F -0.117 7.117 17 C -0.139 4.139 18 C -0.092 4.092 19 C -0.037 4.037 20 O -0.109 6.109 21 H 0.073 0.927 22 H 0.017 0.983 23 H 0.005 0.995 24 H 0.099 0.901 25 H 0.127 0.873 26 H 0.191 0.809 27 H 0.171 0.829 28 H 0.199 0.801 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.694 -16.417 0.481 16.439 hybrid contribution -0.083 0.901 -0.321 0.960 sum 0.610 -15.516 0.159 15.529 Atomic orbital electron populations 1.70110 1.08020 1.28001 1.51316 1.26023 0.95729 1.03596 0.94540 0.85435 0.78161 0.77693 0.79378 1.18784 1.21196 1.19047 1.21610 0.93969 0.91535 1.51056 0.90976 1.18962 0.94038 0.92162 0.95277 1.20433 0.96929 0.85280 1.04418 1.23041 0.98036 0.94810 0.83550 1.22435 1.06577 0.95398 1.00186 1.19875 1.01952 0.96693 0.93212 1.20550 0.99165 0.92302 1.01558 1.17478 0.99033 0.86330 0.91492 1.91497 1.81282 1.55158 1.83742 1.21172 1.00925 0.99632 0.92193 1.20116 0.97500 0.90157 1.01403 1.20251 1.00003 0.89110 0.94323 1.83984 1.61311 1.30560 1.35093 0.92717 0.98313 0.99464 0.90111 0.87314 0.80867 0.82858 0.80099 0.81500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.37 15 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 15 3 Si 0.97 43.21 29.54 68.60 2.03 45.23 15 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 7 C -0.54 -29.93 9.11 25.60 0.23 -29.70 15 8 H 0.07 3.68 7.74 -2.91 -0.02 3.66 15 9 C 0.03 1.70 4.96 29.85 0.15 1.85 15 10 C -0.03 -1.34 5.66 29.85 0.17 -1.17 15 11 C 0.05 2.01 6.49 24.72 0.16 2.17 15 12 C -0.23 -7.74 11.01 23.54 0.26 -7.48 15 13 C -0.12 -3.70 6.39 -20.21 -0.13 -3.83 15 14 C -0.12 -3.08 10.07 22.48 0.23 -2.85 15 15 C 0.08 1.79 7.29 22.36 0.16 1.95 15 16 F -0.14 -3.15 17.26 44.97 0.78 -2.37 15 17 C -0.12 -2.42 9.99 22.34 0.22 -2.19 15 18 C -0.07 -1.74 10.06 22.33 0.22 -1.51 15 19 C 0.01 0.33 7.41 22.97 0.17 0.50 15 20 O -0.21 -7.85 10.58 -9.56 -0.10 -7.95 15 21 H 0.26 15.08 8.31 -92.71 -0.77 14.31 15 22 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 15 23 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 15 24 H 0.08 3.08 8.14 -2.39 -0.02 3.06 15 25 H 0.11 3.85 8.14 -2.39 -0.02 3.83 15 26 H 0.17 5.14 8.06 -2.91 -0.02 5.11 15 27 H 0.15 3.40 8.06 -2.91 -0.02 3.38 15 28 H 0.18 2.24 8.06 -2.91 -0.02 2.21 15 29 H 0.17 2.95 8.06 -2.91 -0.02 2.93 15 Total: -1.00 -65.15 266.73 6.45 -58.70 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.16 Total: 4.63 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 2.31 Total: -41.85 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.28 Total: -56.37 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.10 Total: -7.95 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -65.15 6.45 -58.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059800.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.325 kcal (2) G-P(sol) polarization free energy of solvation -65.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds