Wall clock time and date at job start Sun Mar 29 2020 22:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00247 * 2 1 4 4 H 1.48501 * 109.47171 * 240.00219 * 3 2 1 5 5 H 1.48501 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48489 * 109.47129 * 119.99942 * 3 2 1 7 7 C 1.37876 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00404 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00008 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47429 * 180.02562 * 9 7 2 11 11 N 1.39166 * 124.35546 * 269.97992 * 10 9 7 12 12 C 1.29727 * 112.70946 * 180.02562 * 11 10 9 13 13 C 1.46599 * 126.54639 * 179.97438 * 12 11 10 14 14 C 1.36480 * 125.97894 * 0.02562 * 13 12 11 15 15 C 1.40700 * 106.71341 * 179.77172 * 14 13 12 16 16 C 1.34882 * 107.09406 * 0.22745 * 15 14 13 17 17 O 1.34276 * 108.75766 * 359.97438 * 16 15 14 18 18 C 1.51443 * 106.91021 * 0.26201 * 12 11 10 19 19 C 1.34865 * 124.34935 * 89.99967 * 10 9 7 20 20 O 1.21316 * 127.29913 * 0.02562 * 19 10 9 21 21 H 0.97007 * 120.00306 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.46923 * 60.00141 * 9 7 2 23 23 H 1.08996 * 109.47177 * 300.00634 * 9 7 2 24 24 H 1.08002 * 126.64653 * 0.04205 * 14 13 12 25 25 H 1.07993 * 126.45453 * 180.21115 * 15 14 13 26 26 H 1.08002 * 125.61783 * 179.97438 * 16 15 14 27 27 H 1.09000 * 110.58111 * 118.28592 * 18 12 11 28 28 H 1.09000 * 110.58384 * 241.18973 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 7 2.7129 -4.2099 -1.1494 12 6 3.5382 -5.1759 -0.8876 13 6 4.2475 -6.0072 -1.8648 14 6 4.1573 -5.9019 -3.2226 15 6 5.0050 -6.8869 -3.7620 16 6 5.5621 -7.5426 -2.7232 17 8 5.1010 -7.0110 -1.5796 18 6 3.6235 -5.2858 0.6205 19 6 2.6974 -4.1910 1.1129 20 8 2.4489 -3.9010 2.2644 21 1 -0.4851 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6246 -2.5570 0.8896 24 1 3.5555 -5.1961 -3.7759 25 1 5.1769 -7.0815 -4.8102 26 1 6.2635 -8.3604 -2.7989 27 1 3.2757 -6.2635 0.9537 28 1 4.6430 -5.1041 0.9609 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339431347.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:56 Heat of formation + Delta-G solvation = 38.123086 kcal Electronic energy + Delta-G solvation = -15499.865989 eV Core-core repulsion = 12712.399213 eV Total energy + Delta-G solvation = -2787.466776 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.55889 -40.46205 -36.81130 -33.87262 -33.09493 -32.07867 -29.60419 -28.74525 -26.90660 -23.51567 -22.36653 -21.79679 -20.35710 -19.18516 -17.45212 -16.79736 -16.21792 -15.98206 -15.34144 -15.16629 -14.52033 -14.36921 -13.57096 -12.97173 -12.82711 -12.78468 -12.55316 -12.41648 -11.71922 -11.58136 -11.04809 -10.77699 -10.65892 -10.21092 -10.05954 -9.81316 -9.25933 -8.90334 -8.55370 -7.63353 -6.17338 -4.23691 0.97234 2.18649 2.44380 2.71320 3.25933 3.28648 3.31821 3.36903 3.43881 4.09016 4.34771 4.37645 4.86919 4.92923 5.16796 5.19972 5.41291 5.48530 5.77572 5.80809 6.02322 6.15479 6.40641 6.91467 6.96945 7.12482 7.21309 7.76719 7.99063 8.22490 8.45060 8.79433 9.41409 10.90870 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.033038 B = 0.006123 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.317604 B = 4571.527475 C = 5020.689751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.264 3.736 10 N -0.431 5.431 11 N -0.177 5.177 12 C 0.105 3.895 13 C 0.058 3.942 14 C -0.159 4.159 15 C -0.214 4.214 16 C -0.030 4.030 17 O -0.168 6.168 18 C -0.163 4.163 19 C 0.493 3.507 20 O -0.498 6.498 21 H 0.268 0.732 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.159 0.841 25 H 0.152 0.848 26 H 0.207 0.793 27 H 0.129 0.871 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.577 -14.281 -6.193 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.148 3.852 10 N -0.251 5.251 11 N 0.011 4.989 12 C -0.083 4.083 13 C 0.007 3.993 14 C -0.182 4.182 15 C -0.233 4.233 16 C -0.100 4.100 17 O -0.062 6.062 18 C -0.204 4.204 19 C 0.280 3.720 20 O -0.371 6.371 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.176 0.824 25 H 0.170 0.830 26 H 0.223 0.777 27 H 0.146 0.854 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.704 -13.348 -5.844 16.973 hybrid contribution 0.802 0.583 0.332 1.046 sum 9.506 -12.764 -5.512 16.843 Atomic orbital electron populations 1.69908 1.06016 1.27636 1.49477 1.24913 0.94976 0.99370 0.94544 0.86433 0.79474 0.82026 0.78831 1.19987 1.20934 1.20032 1.21304 0.93553 0.90136 1.52554 0.92152 1.19587 0.85946 0.80058 0.99651 1.50526 1.41840 1.32434 1.00312 1.75388 1.05999 1.04176 1.13340 1.21168 0.98937 0.96242 0.91909 1.18478 0.97018 0.92375 0.91424 1.22012 1.02298 1.01455 0.92388 1.21796 1.01688 0.99312 1.00471 1.24180 1.02305 1.01233 0.82243 1.84051 1.48334 1.39615 1.34241 1.21951 1.03479 1.01831 0.93187 1.21109 0.81612 0.83326 0.85988 1.90745 1.61632 1.66955 1.17766 0.92285 0.93100 0.92594 0.82356 0.82988 0.77651 0.85369 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.42 15 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 15 3 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 15 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.27 -6.62 7.11 56.52 0.40 -6.21 15 7 C -0.54 -15.44 9.39 -34.44 -0.32 -15.77 15 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 9 C 0.26 7.07 5.98 -5.20 -0.03 7.04 15 10 N -0.43 -10.00 3.52 -61.11 -0.22 -10.22 15 11 N -0.18 -3.60 12.10 35.09 0.42 -3.17 15 12 C 0.10 1.74 7.39 -79.75 -0.59 1.15 15 13 C 0.06 0.82 7.21 -36.85 -0.27 0.56 15 14 C -0.16 -2.03 10.83 -39.29 -0.43 -2.46 15 15 C -0.21 -2.09 10.88 -39.84 -0.43 -2.52 15 16 C -0.03 -0.27 12.08 29.54 0.36 0.09 15 17 O -0.17 -2.02 10.68 4.36 0.05 -1.97 15 18 C -0.16 -2.57 6.91 -28.22 -0.19 -2.76 15 19 C 0.49 10.69 8.40 -10.50 -0.09 10.60 15 20 O -0.50 -12.32 17.79 5.53 0.10 -12.22 15 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 22 H 0.05 1.38 8.14 -51.93 -0.42 0.96 15 23 H 0.06 1.59 8.02 -51.93 -0.42 1.17 15 24 H 0.16 2.00 8.06 -52.49 -0.42 1.58 15 25 H 0.15 1.08 8.06 -52.49 -0.42 0.66 15 26 H 0.21 0.90 8.06 -52.49 -0.42 0.48 15 27 H 0.13 1.66 8.14 -51.93 -0.42 1.24 15 28 H 0.13 1.76 8.14 -51.93 -0.42 1.33 15 LS Contribution 265.49 15.07 4.00 4.00 Total: -1.00 -32.75 265.49 -4.52 -37.27 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -2.50 Total: -2.78 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.09 Total: -2.31 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.95 Total: -38.81 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.14 Total: -14.19 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.75 -4.52 -37.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339431347.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.391 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds