Wall clock time and date at job start Sun Mar 29 2020 22:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47089 * 79.50841 * 3 2 1 5 5 C 1.37103 * 119.99659 * 264.20441 * 4 3 2 6 6 H 1.08008 * 119.99755 * 198.12056 * 5 4 3 7 7 C 1.38947 * 120.00197 * 18.11001 * 5 4 3 8 8 N 1.31412 * 119.99516 * 18.73437 * 7 5 4 9 9 Si 1.86791 * 120.00223 * 198.72778 * 7 5 4 10 10 H 1.48499 * 109.47109 * 85.59342 * 9 7 5 11 11 H 1.48497 * 109.47339 * 205.59209 * 9 7 5 12 12 H 1.48497 * 109.47556 * 325.59250 * 9 7 5 13 13 C 1.34781 * 120.00279 * 84.20158 * 4 3 2 14 14 O 1.21286 * 119.99585 * 179.97438 * 13 4 3 15 15 C 1.50695 * 119.99889 * 359.97438 * 13 4 3 16 16 N 1.46497 * 109.46834 * 180.02562 * 15 13 4 17 17 C 1.36880 * 126.40133 * 90.00139 * 16 15 13 18 18 C 1.34665 * 106.81990 * 179.97438 * 17 16 15 19 19 N 1.34126 * 108.02141 * 0.02562 * 18 17 16 20 20 C 1.30499 * 109.25627 * 359.72444 * 19 18 17 21 21 H 1.08997 * 109.47394 * 319.49998 * 3 2 1 22 22 H 1.09007 * 109.46378 * 199.50279 * 3 2 1 23 23 H 0.97006 * 119.99780 * 179.97438 * 8 7 5 24 24 H 1.09006 * 109.47176 * 60.00109 * 15 13 4 25 25 H 1.08995 * 109.47371 * 300.00277 * 15 13 4 26 26 H 1.08002 * 126.58362 * 359.96646 * 17 16 15 27 27 H 1.08001 * 125.98621 * 179.97438 * 18 17 16 28 28 H 1.08002 * 125.65423 * 180.29258 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.2506 -1.3581 5 6 3.4385 -1.5224 -1.7391 6 1 4.0603 -1.6768 -2.6087 7 6 2.9855 -2.6127 -1.0066 8 7 1.9594 -2.4794 -0.1965 9 14 3.8349 -4.2680 -1.1733 10 1 4.9947 -4.3247 -0.2477 11 1 2.8779 -5.3518 -0.8346 12 1 4.3074 -4.4435 -2.5702 13 6 3.2095 0.7684 -2.2330 14 8 3.6143 0.5603 -3.3572 15 6 2.8328 2.1662 -1.8143 16 7 3.0433 3.0851 -2.9357 17 6 2.1267 3.4177 -3.8963 18 6 2.7320 4.2865 -4.7283 19 7 3.9843 4.4787 -4.2881 20 6 4.1761 3.7665 -3.2115 21 1 2.9717 -0.7806 0.6674 22 1 2.9708 0.9696 0.3431 23 1 1.6429 -3.2406 0.3147 24 1 3.4528 2.4726 -0.9717 25 1 1.7836 2.1870 -1.5199 26 1 1.1128 3.0533 -3.9723 27 1 2.2873 4.7471 -5.5981 28 1 5.0901 3.7269 -2.6375 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347478081.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:18 Heat of formation + Delta-G solvation = 56.809406 kcal Electronic energy + Delta-G solvation = -15979.892617 eV Core-core repulsion = 13225.528892 eV Total energy + Delta-G solvation = -2754.363725 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.90425 -40.57074 -37.67376 -36.25803 -34.81860 -33.74057 -30.38985 -29.49340 -28.79690 -26.29234 -22.43269 -22.20010 -21.06549 -19.83730 -18.51367 -18.27214 -17.87493 -16.70357 -15.99404 -15.87980 -15.49054 -14.99545 -14.78793 -14.73650 -14.34679 -14.03109 -13.91075 -13.47549 -13.27480 -13.10692 -12.90003 -12.36948 -12.19065 -12.12727 -11.17443 -11.10649 -10.95118 -10.24862 -9.99628 -9.37284 -8.45169 -6.03450 1.12951 1.36132 1.48195 1.56164 1.71763 1.87060 2.06601 2.22959 2.29196 2.33676 2.95700 3.03883 3.53515 3.78467 3.90015 3.92903 4.07965 4.15691 4.55778 4.61835 4.81870 4.93140 5.38196 5.44074 5.84001 5.93581 6.26385 6.37860 6.98604 7.05434 7.17572 7.25839 7.79335 8.57075 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.034047 B = 0.007538 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.191009 B = 3713.475105 C = 4249.940393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.256 3.744 3 C 0.216 3.784 4 N -0.445 5.445 5 C -0.338 4.338 6 H 0.079 0.921 7 C 0.011 3.989 8 N -0.890 5.890 9 Si 0.985 3.015 10 H -0.257 1.257 11 H -0.286 1.286 12 H -0.282 1.282 13 C 0.430 3.570 14 O -0.609 6.609 15 C 0.097 3.903 16 N -0.442 5.442 17 C -0.059 4.059 18 C -0.051 4.051 19 N -0.533 5.533 20 C 0.187 3.813 21 H 0.129 0.871 22 H 0.150 0.850 23 H 0.276 0.724 24 H 0.166 0.834 25 H 0.120 0.880 26 H 0.180 0.820 27 H 0.185 0.815 28 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 7.420 4.644 9.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.062 4.062 3 C 0.090 3.910 4 N -0.165 5.165 5 C -0.466 4.466 6 H 0.097 0.903 7 C -0.192 4.192 8 N -0.529 5.529 9 Si 0.810 3.190 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.208 1.208 13 C 0.219 3.781 14 O -0.494 6.494 15 C -0.029 4.029 16 N -0.123 5.123 17 C -0.192 4.192 18 C -0.197 4.197 19 N -0.252 5.252 20 C -0.095 4.095 21 H 0.147 0.853 22 H 0.167 0.833 23 H 0.086 0.914 24 H 0.183 0.817 25 H 0.138 0.862 26 H 0.197 0.803 27 H 0.202 0.798 28 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.041 7.594 3.976 8.812 hybrid contribution -0.233 -1.950 0.013 1.964 sum 1.807 5.644 3.989 7.144 Atomic orbital electron populations 1.80952 1.14854 1.13656 1.09287 1.29780 0.95814 0.88954 0.91656 1.19255 0.79997 1.05769 0.86012 1.43762 1.55989 1.06794 1.09948 1.19571 1.30566 0.82042 1.14408 0.90266 1.25822 0.95004 1.02165 0.96201 1.69882 1.21295 1.33615 1.28061 0.85047 0.78340 0.77062 0.78542 1.18170 1.21163 1.20780 1.21074 0.83901 0.87947 0.85201 1.90612 1.51571 1.85232 1.21955 1.21876 1.06172 0.85749 0.89055 1.45139 1.12197 1.32720 1.22253 1.23001 0.98034 1.04206 0.93976 1.22572 0.91537 1.03012 1.02627 1.70220 1.18174 1.25679 1.11164 1.25520 0.92532 0.94378 0.97062 0.85309 0.83291 0.91372 0.81662 0.86220 0.80286 0.79815 0.75219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -21.55 18.54 20.01 0.37 -21.17 15 2 C 0.26 9.65 12.95 89.44 1.16 10.81 15 3 C 0.22 6.86 4.91 84.57 0.42 7.27 15 4 N -0.44 -18.23 2.60 -645.42 -1.68 -19.91 15 5 C -0.34 -16.39 9.33 84.04 0.78 -15.60 15 6 H 0.08 4.26 7.38 -2.91 -0.02 4.24 15 7 C 0.01 0.50 4.94 84.93 0.42 0.92 15 8 N -0.89 -41.20 9.33 21.66 0.20 -41.00 15 9 Si 0.99 38.16 29.59 68.60 2.03 40.19 15 10 H -0.26 -9.25 7.11 99.48 0.71 -8.55 15 11 H -0.29 -11.11 7.11 99.48 0.71 -10.40 15 12 H -0.28 -11.50 7.11 99.48 0.71 -10.79 15 13 C 0.43 17.20 7.63 87.65 0.67 17.86 15 14 O -0.61 -30.96 16.08 -3.05 -0.05 -31.01 15 15 C 0.10 2.63 5.24 85.63 0.45 3.08 15 16 N -0.44 -13.54 2.24 -533.16 -1.19 -14.74 15 17 C -0.06 -1.85 11.58 83.09 0.96 -0.88 15 18 C -0.05 -1.61 11.87 83.52 0.99 -0.62 15 19 N -0.53 -18.26 11.25 -200.31 -2.25 -20.51 15 20 C 0.19 5.65 12.56 180.26 2.26 7.91 15 21 H 0.13 4.34 6.40 -2.39 -0.02 4.32 15 22 H 0.15 2.74 6.68 -2.38 -0.02 2.73 15 23 H 0.28 12.45 8.31 -92.70 -0.77 11.68 15 24 H 0.17 2.69 7.41 -2.38 -0.02 2.68 15 25 H 0.12 2.99 7.51 -2.39 -0.02 2.97 15 26 H 0.18 4.94 8.06 -2.91 -0.02 4.91 15 27 H 0.18 4.73 8.06 -2.91 -0.02 4.70 15 28 H 0.23 5.04 8.06 -2.91 -0.02 5.01 15 Total: -1.00 -70.61 259.83 6.73 -63.88 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.19 Total: 13.51 kcal Atomic # 6 Polarization: 22.64 SS G_CDS: 8.11 Total: 30.76 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -4.55 Total: -117.33 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.05 Total: -31.01 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -70.61 6.73 -63.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347478081.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.687 kcal (2) G-P(sol) polarization free energy of solvation -70.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds