Wall clock time and date at job start Sun Mar 29 2020 22:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.38045 * 126.43582 * 295.04696 * 3 2 1 5 5 N 1.34360 * 107.51991 * 180.28260 * 4 3 2 6 6 H 0.97008 * 125.68977 * 179.73389 * 5 4 3 7 7 N 1.39916 * 108.61286 * 359.74706 * 5 4 3 8 8 C 1.30938 * 108.85989 * 0.02562 * 7 5 4 9 9 N 1.39825 * 126.06557 * 179.97438 * 8 7 5 10 10 C 1.34773 * 119.99588 * 0.02562 * 9 8 7 11 11 O 1.21291 * 120.00601 * 359.73202 * 10 9 8 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47348 * 179.72561 * 12 10 9 14 14 C 1.50696 * 109.46969 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00408 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99883 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99875 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99961 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46983 * 89.99938 * 18 16 14 20 20 H 1.48499 * 109.47218 * 210.00008 * 18 16 14 21 21 H 1.48505 * 109.47256 * 330.00013 * 18 16 14 22 22 H 1.08003 * 126.23392 * 0.03013 * 4 3 2 23 23 H 0.96998 * 119.99886 * 180.02562 * 9 8 7 24 24 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 25 25 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 26 26 H 1.09000 * 109.46986 * 300.00089 * 13 12 10 27 27 H 1.09002 * 109.46857 * 60.00224 * 13 12 10 28 28 H 0.96999 * 119.99804 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3881 -0.4692 1.0062 5 7 4.6590 -0.2785 0.6142 6 1 5.4499 -0.5113 1.1255 7 7 4.6514 0.3122 -0.6541 8 6 3.4100 0.4821 -1.0344 9 7 2.9891 1.0435 -2.2439 10 6 3.8994 1.4676 -3.1427 11 8 5.0836 1.3667 -2.9006 12 6 3.4459 2.0732 -4.4461 13 6 4.6679 2.4739 -5.2749 14 6 4.2143 3.0789 -6.5784 15 1 3.1599 3.1691 -6.7940 16 6 5.1455 3.5174 -7.4959 17 7 4.7496 4.0459 -8.6333 18 14 6.9692 3.3608 -7.1234 19 1 7.4648 2.0513 -7.6182 20 1 7.7084 4.4572 -7.7992 21 1 7.1843 3.4494 -5.6567 22 1 3.0666 -0.9062 1.9400 23 1 2.0421 1.1277 -2.4359 24 1 2.8547 1.3435 -4.9995 25 1 2.8382 2.9554 -4.2448 26 1 5.2589 3.2035 -4.7214 27 1 5.2755 1.5916 -5.4762 28 1 5.4047 4.3540 -9.2789 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639697708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:51 Heat of formation + Delta-G solvation = 66.823710 kcal Electronic energy + Delta-G solvation = -15107.406024 eV Core-core repulsion = 12353.476552 eV Total energy + Delta-G solvation = -2753.929472 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.70778 -39.32879 -36.59788 -34.91290 -33.54852 -31.57378 -30.83646 -30.55083 -26.38650 -23.52624 -22.75346 -20.62646 -20.07217 -19.18267 -17.22569 -16.77470 -16.41734 -15.97682 -15.77868 -14.80274 -14.27650 -14.04469 -13.54483 -13.36694 -13.25045 -12.84149 -12.61154 -12.58698 -11.48712 -11.24496 -10.97731 -10.95682 -10.22788 -10.09226 -9.81716 -9.42045 -9.21796 -9.21509 -8.66392 -8.52109 -6.04353 -4.03705 1.14729 1.89185 2.21370 2.48517 3.02489 3.05848 3.37428 3.43886 3.44188 3.54554 3.93999 4.40683 4.49678 4.65738 5.02537 5.20669 5.30959 5.49925 5.96704 6.00078 6.50087 6.55470 6.73461 7.00561 7.30914 7.38015 7.40124 7.64975 7.75376 8.36203 8.50751 8.98266 9.58142 11.08322 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.042968 B = 0.005160 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.493486 B = 5425.326817 C = 6056.348442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.290 3.710 3 C -0.213 4.213 4 C 0.143 3.857 5 N -0.452 5.452 6 H 0.451 0.549 7 N -0.270 5.270 8 C 0.352 3.648 9 N -0.648 5.648 10 C 0.504 3.496 11 O -0.484 6.484 12 C -0.118 4.118 13 C 0.001 3.999 14 C -0.527 4.527 15 H 0.074 0.926 16 C 0.070 3.930 17 N -0.902 5.902 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.260 1.260 22 H 0.195 0.805 23 H 0.420 0.580 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.025 0.975 27 H 0.021 0.979 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.400 -9.621 20.573 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.025 4.025 3 C -0.232 4.232 4 C -0.015 4.015 5 N -0.157 5.157 6 H 0.297 0.703 7 N -0.101 5.101 8 C 0.091 3.909 9 N -0.300 5.300 10 C 0.292 3.708 11 O -0.352 6.352 12 C -0.158 4.158 13 C -0.037 4.037 14 C -0.564 4.564 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.541 5.541 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.185 1.185 22 H 0.212 0.788 23 H 0.258 0.742 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.946 -9.388 20.119 22.286 hybrid contribution 0.400 -0.272 0.512 0.704 sum -1.546 -9.660 20.631 22.833 Atomic orbital electron populations 1.81311 1.11440 1.10777 1.07361 1.24408 0.91106 0.92888 0.94063 1.15765 0.85996 1.22588 0.98842 1.22881 0.84317 0.95819 0.98454 1.46121 1.07067 1.47426 1.15088 0.70323 1.78115 1.15959 1.21615 0.94382 1.19324 0.90155 0.93986 0.87386 1.43575 1.11685 1.60866 1.13830 1.22025 0.86037 0.76962 0.85758 1.90765 1.16444 1.51325 1.76708 1.21728 1.02914 1.01005 0.90182 1.19403 0.92314 0.97109 0.94865 1.21077 0.95318 1.40283 0.99759 0.90811 1.24969 0.99101 0.94394 0.94735 1.69909 1.34447 1.41501 1.08225 0.86797 0.85427 0.77828 0.79519 1.20223 1.21438 1.18477 0.78836 0.74222 0.88953 0.88924 0.95620 0.96069 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.49 18.54 41.84 0.78 -4.72 15 2 C 0.29 3.11 15.62 -22.47 -0.35 2.75 15 3 C -0.21 -2.06 5.98 -106.68 -0.64 -2.70 15 4 C 0.14 0.84 12.00 -16.52 -0.20 0.64 15 5 N -0.45 -3.41 7.28 30.87 0.22 -3.19 15 6 H 0.45 1.69 8.96 -182.73 -1.64 0.05 15 7 N -0.27 -3.74 10.86 31.62 0.34 -3.40 15 8 C 0.35 4.62 7.81 -154.41 -1.21 3.41 15 9 N -0.65 -8.85 5.44 -10.92 -0.06 -8.91 15 10 C 0.50 8.90 7.80 -10.98 -0.09 8.82 15 11 O -0.48 -10.42 14.70 5.55 0.08 -10.34 15 12 C -0.12 -2.18 5.64 -27.88 -0.16 -2.34 15 13 C 0.00 0.02 3.33 -27.89 -0.09 -0.07 15 14 C -0.53 -14.81 9.66 -34.44 -0.33 -15.14 15 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 15 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 17 N -0.90 -27.77 13.96 55.43 0.77 -26.99 15 18 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 15 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 21 H -0.26 -6.58 6.54 56.52 0.37 -6.21 15 22 H 0.19 0.17 8.06 -52.48 -0.42 -0.25 15 23 H 0.42 4.50 8.61 -40.82 -0.35 4.15 15 24 H 0.09 1.55 8.14 -51.93 -0.42 1.12 15 25 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 26 H 0.03 0.65 7.16 -51.93 -0.37 0.28 15 27 H 0.02 0.53 7.53 -51.93 -0.39 0.14 15 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 LS Contribution 265.20 15.07 4.00 4.00 Total: -1.00 -37.21 265.20 -5.30 -42.51 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -3.61 Total: -3.93 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.16 Total: -2.69 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 2.06 Total: -47.21 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -37.21 -5.30 -42.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639697708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.332 kcal (2) G-P(sol) polarization free energy of solvation -37.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds