Wall clock time and date at job start Sun Mar 29 2020 22:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.38045 * 126.43582 * 295.04696 * 3 2 1 5 5 N 1.34360 * 107.51991 * 180.28260 * 4 3 2 6 6 H 0.97008 * 125.68977 * 179.73389 * 5 4 3 7 7 N 1.39916 * 108.61286 * 359.74706 * 5 4 3 8 8 C 1.30938 * 108.85989 * 0.02562 * 7 5 4 9 9 N 1.39825 * 126.06557 * 179.97438 * 8 7 5 10 10 C 1.34773 * 119.99588 * 0.02562 * 9 8 7 11 11 O 1.21291 * 120.00601 * 359.73202 * 10 9 8 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47348 * 179.72561 * 12 10 9 14 14 C 1.50696 * 109.46969 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00408 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99883 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99875 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99961 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46983 * 89.99938 * 18 16 14 20 20 H 1.48499 * 109.47218 * 210.00008 * 18 16 14 21 21 H 1.48505 * 109.47256 * 330.00013 * 18 16 14 22 22 H 1.08003 * 126.23392 * 0.03013 * 4 3 2 23 23 H 0.96998 * 119.99886 * 180.02562 * 9 8 7 24 24 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 25 25 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 26 26 H 1.09000 * 109.46986 * 300.00089 * 13 12 10 27 27 H 1.09002 * 109.46857 * 60.00224 * 13 12 10 28 28 H 0.96999 * 119.99804 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3881 -0.4692 1.0062 5 7 4.6590 -0.2785 0.6142 6 1 5.4499 -0.5113 1.1255 7 7 4.6514 0.3122 -0.6541 8 6 3.4100 0.4821 -1.0344 9 7 2.9891 1.0435 -2.2439 10 6 3.8994 1.4676 -3.1427 11 8 5.0836 1.3667 -2.9006 12 6 3.4459 2.0732 -4.4461 13 6 4.6679 2.4739 -5.2749 14 6 4.2143 3.0789 -6.5784 15 1 3.1599 3.1691 -6.7940 16 6 5.1455 3.5174 -7.4959 17 7 4.7496 4.0459 -8.6333 18 14 6.9692 3.3608 -7.1234 19 1 7.4648 2.0513 -7.6182 20 1 7.7084 4.4572 -7.7992 21 1 7.1843 3.4494 -5.6567 22 1 3.0666 -0.9062 1.9400 23 1 2.0421 1.1277 -2.4359 24 1 2.8547 1.3435 -4.9995 25 1 2.8382 2.9554 -4.2448 26 1 5.2589 3.2035 -4.7214 27 1 5.2755 1.5916 -5.4762 28 1 5.4047 4.3540 -9.2789 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639697708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:51 Heat of formation + Delta-G solvation = 38.612136 kcal Electronic energy + Delta-G solvation = -15108.629370 eV Core-core repulsion = 12353.476552 eV Total energy + Delta-G solvation = -2755.152818 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.52388 -40.62702 -37.46517 -36.10082 -35.52529 -33.39823 -31.75637 -31.47787 -28.19877 -24.53663 -23.91348 -22.18775 -21.15088 -20.16659 -19.11085 -17.61278 -17.43618 -17.37154 -16.90801 -16.23282 -15.92637 -15.10927 -14.91650 -14.64197 -14.47960 -14.16999 -14.07400 -13.42741 -13.41482 -12.93181 -12.27651 -12.12828 -11.97752 -11.85329 -11.74911 -11.39150 -10.86224 -10.76693 -10.03483 -9.57210 -8.30082 -6.33145 0.57134 0.86136 1.35129 1.37077 1.42281 1.51940 1.67082 1.82411 2.23011 2.36403 2.59791 3.05844 3.10859 3.75295 3.82244 4.20282 4.35587 4.40105 4.47727 4.70924 4.97599 5.33231 5.44533 5.49034 5.61484 5.90586 6.24679 6.38262 6.59251 6.69411 6.73979 7.12609 7.32187 8.85516 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.042968 B = 0.005160 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.493486 B = 5425.326817 C = 6056.348442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.315 3.685 3 C -0.232 4.232 4 C 0.191 3.809 5 N -0.436 5.436 6 H 0.468 0.532 7 N -0.326 5.326 8 C 0.332 3.668 9 N -0.636 5.636 10 C 0.513 3.487 11 O -0.528 6.528 12 C -0.113 4.113 13 C 0.005 3.995 14 C -0.529 4.529 15 H 0.051 0.949 16 C 0.013 3.987 17 N -0.944 5.944 18 Si 0.939 3.061 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.259 1.259 22 H 0.255 0.745 23 H 0.433 0.567 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.013 0.987 27 H 0.012 0.988 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 -10.898 23.227 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C 0.001 3.999 3 C -0.251 4.251 4 C 0.032 3.968 5 N -0.143 5.143 6 H 0.318 0.682 7 N -0.157 5.157 8 C 0.072 3.928 9 N -0.287 5.287 10 C 0.301 3.699 11 O -0.400 6.400 12 C -0.153 4.153 13 C -0.033 4.033 14 C -0.567 4.567 15 H 0.070 0.930 16 C -0.185 4.185 17 N -0.585 5.585 18 Si 0.763 3.237 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.183 1.183 22 H 0.271 0.729 23 H 0.273 0.727 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.671 -10.683 22.807 25.240 hybrid contribution 0.265 0.075 -0.206 0.344 sum -1.406 -10.608 22.601 25.006 Atomic orbital electron populations 1.81345 1.12563 1.12485 1.08688 1.24398 0.91000 0.91631 0.92884 1.15820 0.85460 1.24516 0.99263 1.23737 0.82460 0.91909 0.98648 1.46084 1.08725 1.46152 1.13359 0.68244 1.77976 1.16986 1.23237 0.97463 1.19475 0.90982 0.94890 0.87480 1.43137 1.11663 1.60069 1.13865 1.21597 0.85732 0.76676 0.85877 1.90746 1.18149 1.53448 1.77675 1.21534 1.00696 1.02476 0.90567 1.19240 0.94402 0.95995 0.93701 1.21420 0.94393 1.39596 1.01276 0.93030 1.25810 1.03606 0.94396 0.94680 1.70026 1.36005 1.43051 1.09380 0.85822 0.80323 0.78242 0.79288 1.19414 1.20546 1.18342 0.72912 0.72688 0.87187 0.87203 0.96861 0.96986 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.33 18.54 19.00 0.35 -10.97 15 2 C 0.32 6.03 15.62 88.33 1.38 7.41 15 3 C -0.23 -3.82 5.98 -21.20 -0.13 -3.95 15 4 C 0.19 1.34 12.00 84.26 1.01 2.35 15 5 N -0.44 -5.10 7.28 -56.26 -0.41 -5.51 15 6 H 0.47 1.83 8.96 -213.43 -1.91 -0.08 15 7 N -0.33 -8.53 10.86 -53.88 -0.59 -9.11 15 8 C 0.33 8.16 7.81 133.88 1.05 9.21 15 9 N -0.64 -16.73 5.44 -306.84 -1.67 -18.40 15 10 C 0.51 17.88 7.80 87.66 0.68 18.56 15 11 O -0.53 -22.79 14.70 -3.06 -0.05 -22.83 15 12 C -0.11 -4.11 5.64 29.85 0.17 -3.94 15 13 C 0.00 0.23 3.33 29.85 0.10 0.32 15 14 C -0.53 -30.16 9.66 25.60 0.25 -29.91 15 15 H 0.05 3.09 7.99 -2.91 -0.02 3.07 15 16 C 0.01 0.75 5.47 84.66 0.46 1.21 15 17 N -0.94 -59.03 13.96 21.45 0.30 -58.73 15 18 Si 0.94 46.47 27.47 68.60 1.88 48.35 15 19 H -0.27 -12.90 7.11 99.48 0.71 -12.19 15 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 15 21 H -0.26 -12.68 6.54 99.48 0.65 -12.03 15 22 H 0.26 -1.35 8.06 -2.91 -0.02 -1.37 15 23 H 0.43 8.75 8.61 -92.71 -0.80 7.96 15 24 H 0.11 3.59 8.14 -2.39 -0.02 3.57 15 25 H 0.11 3.59 8.14 -2.39 -0.02 3.57 15 26 H 0.01 0.66 7.16 -2.39 -0.02 0.65 15 27 H 0.01 0.59 7.53 -2.39 -0.02 0.57 15 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 15 Total: -1.00 -83.29 265.20 3.26 -80.03 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: -1.54 Total: -4.10 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 4.97 Total: 1.28 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -2.01 Total: -102.72 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.88 Total: 48.35 kcal Total: -83.29 3.26 -80.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639697708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.638 kcal (2) G-P(sol) polarization free energy of solvation -83.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds