Wall clock time and date at job start Sun Mar 29 2020 22:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47181 * 2 1 4 4 C 1.50699 * 109.46987 * 119.99897 * 2 1 3 5 5 H 1.07997 * 120.00098 * 120.00462 * 4 2 1 6 6 C 1.37883 * 120.00139 * 300.00267 * 4 2 1 7 7 N 1.31511 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99971 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47081 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46945 * 119.99991 * 8 6 4 11 11 H 1.48494 * 109.46919 * 239.99826 * 8 6 4 12 12 C 1.50699 * 109.47151 * 239.99981 * 2 1 3 13 13 O 1.20828 * 119.99953 * 270.00056 * 12 2 1 14 14 N 1.34772 * 120.00132 * 90.00149 * 12 2 1 15 15 N 1.39922 * 125.88023 * 359.97129 * 14 12 2 16 16 C 1.30234 * 109.28775 * 180.02562 * 15 14 12 17 17 C 1.41575 * 108.48235 * 0.02562 * 16 15 14 18 18 C 1.43209 * 126.46047 * 179.73522 * 17 16 15 19 19 N 7.19328 * 106.39568 * 273.16116 * 2 1 3 20 20 C 1.36426 * 125.88378 * 180.02562 * 14 12 2 21 21 N 1.37826 * 126.54056 * 359.97438 * 20 14 12 22 22 H 1.09002 * 109.46940 * 60.00361 * 1 2 3 23 23 H 1.09000 * 109.46453 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46927 * 300.00266 * 1 2 3 25 25 H 0.96998 * 120.00358 * 180.02562 * 7 6 4 26 26 H 1.08001 * 125.76483 * 179.97438 * 16 15 14 27 27 H 0.97002 * 120.00267 * 179.97438 * 21 20 14 28 28 H 0.97001 * 120.00551 * 359.97438 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.1474 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1678 -1.5866 4.8165 12 6 2.0324 -0.7104 -1.2304 13 8 2.2338 -1.9014 -1.2005 14 7 2.2571 -0.0173 -2.3642 15 7 2.0660 1.3581 -2.5361 16 6 2.3810 1.6871 -3.7562 17 6 2.7970 0.5206 -4.4423 18 6 3.2227 0.4425 -5.8074 19 7 3.5605 0.3805 -6.8903 20 6 2.7090 -0.5360 -3.5423 21 7 3.0188 -1.8554 -3.7928 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7094 1.1618 3.4844 26 1 2.3324 2.6816 -4.1744 27 1 3.3339 -2.1215 -4.6708 28 1 2.9218 -2.5181 -3.0911 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642524947.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:48 Heat of formation + Delta-G solvation = 46.466641 kcal Electronic energy + Delta-G solvation = -15789.993533 eV Core-core repulsion = 13035.181312 eV Total energy + Delta-G solvation = -2754.812221 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.02630 -40.18707 -37.42906 -36.31942 -35.69510 -33.72790 -32.31574 -30.10814 -27.31568 -26.23321 -23.66394 -23.26139 -20.97429 -19.51500 -18.63989 -18.07948 -17.43324 -17.26213 -16.94944 -16.55593 -15.47547 -15.12588 -14.73970 -14.62393 -14.13150 -14.07651 -13.57633 -13.53149 -13.08113 -12.75261 -12.69051 -12.55595 -12.31457 -12.13569 -11.80592 -11.13805 -11.04933 -10.73205 -10.50632 -9.08892 -8.17302 -6.31267 -0.05122 0.99156 1.08506 1.42660 1.45453 1.56684 1.68068 1.75963 2.39757 2.47944 2.58859 3.05377 3.12996 3.49947 3.82426 4.20062 4.40650 4.73300 4.91120 4.96774 5.04265 5.41010 5.51621 5.65561 5.88280 5.92883 6.08982 6.21264 6.49754 6.66001 6.73033 6.79716 7.37070 8.88835 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.048255 B = 0.006324 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.106856 B = 4426.237585 C = 4721.267804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.041 3.959 3 H 0.054 0.946 4 C -0.537 4.537 5 H 0.054 0.946 6 C 0.025 3.975 7 N -0.905 5.905 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.565 3.435 13 O -0.511 6.511 14 N -0.390 5.390 15 N -0.303 5.303 16 C 0.169 3.831 17 C -0.268 4.268 18 C 0.326 3.674 19 N -0.478 5.478 20 C 0.435 3.565 21 N -0.804 5.804 22 H 0.039 0.961 23 H 0.027 0.973 24 H 0.079 0.921 25 H 0.268 0.732 26 H 0.246 0.754 27 H 0.430 0.570 28 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.808 -0.116 -10.143 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.020 3.980 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.360 3.640 13 O -0.380 6.380 14 N -0.194 5.194 15 N -0.120 5.120 16 C -0.026 4.026 17 C -0.289 4.289 18 C 0.013 3.987 19 N -0.157 5.157 20 C 0.203 3.797 21 N -0.351 5.351 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.262 0.738 27 H 0.264 0.736 28 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.908 -0.527 -10.329 10.517 hybrid contribution 0.486 -1.104 0.501 1.306 sum 2.395 -1.632 -9.828 10.246 Atomic orbital electron populations 1.21512 0.94552 0.99570 1.01773 1.18801 0.95306 0.96877 0.86982 0.92835 1.21217 1.32796 1.12891 0.90638 0.92780 1.25593 0.94916 0.95562 1.01500 1.69963 1.36508 1.23242 1.24618 0.85478 0.78314 0.78567 0.79144 1.19869 1.20089 1.20140 1.22106 0.72610 0.86410 0.82921 1.90370 1.48880 1.15946 1.82805 1.47741 1.54020 1.08804 1.08798 1.77538 1.27061 0.87308 1.20136 1.24760 0.89635 0.99887 0.88294 1.15264 1.31315 0.93346 0.89018 1.24104 0.90935 0.93074 0.90611 1.81301 1.14235 1.07872 1.12252 1.18986 0.87656 0.86850 0.86197 1.42053 1.70310 1.03565 1.19152 0.94152 0.95369 0.90208 0.92309 0.73794 0.73588 0.74421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.95 71.98 0.64 -4.69 15 2 C 0.04 2.00 2.39 -12.28 -0.03 1.97 15 3 H 0.05 2.75 7.69 -2.39 -0.02 2.73 15 4 C -0.54 -28.94 8.32 25.60 0.21 -28.73 15 5 H 0.05 3.00 7.14 -2.91 -0.02 2.98 15 6 C 0.02 1.31 5.30 84.66 0.45 1.76 15 7 N -0.91 -48.93 11.32 21.45 0.24 -48.69 15 8 Si 0.96 42.26 29.54 68.60 2.03 44.28 15 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 15 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 12 C 0.56 23.98 6.91 87.66 0.61 24.59 15 13 O -0.51 -22.32 14.16 -1.65 -0.02 -22.34 15 14 N -0.39 -13.63 3.64 -307.21 -1.12 -14.75 15 15 N -0.30 -9.62 11.63 -56.19 -0.65 -10.27 15 16 C 0.17 3.77 11.98 85.75 1.03 4.80 15 17 C -0.27 -6.41 6.00 -21.01 -0.13 -6.54 15 18 C 0.33 7.75 15.57 88.33 1.38 9.12 15 19 N -0.48 -12.91 18.54 19.01 0.35 -12.56 15 20 C 0.43 12.20 7.93 132.20 1.05 13.25 15 21 N -0.80 -18.48 8.97 -53.90 -0.48 -18.96 15 22 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 24 H 0.08 4.00 6.07 -2.39 -0.01 3.99 15 25 H 0.27 13.64 8.31 -92.71 -0.77 12.87 15 26 H 0.25 2.91 8.06 -2.91 -0.02 2.89 15 27 H 0.43 7.21 8.68 -92.71 -0.80 6.40 15 28 H 0.42 10.66 6.67 -92.71 -0.62 10.04 15 Total: -1.00 -61.86 261.37 5.36 -56.49 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -0.19 Total: 11.25 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 5.21 Total: 15.55 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -1.66 Total: -105.24 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.02 Total: -22.34 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -61.86 5.36 -56.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642524947.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.961 kcal (2) G-P(sol) polarization free energy of solvation -61.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds