Wall clock time and date at job start Sun Mar 29 2020 21:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.67513 * 2 1 4 4 C 1.54711 * 110.75185 * 123.22813 * 2 1 3 5 5 C 1.51657 * 101.94315 * 93.10624 * 4 2 1 6 6 C 1.37876 * 132.11250 * 195.60280 * 5 4 2 7 7 C 1.38381 * 120.11781 * 179.11274 * 6 5 4 8 8 C 1.38198 * 119.83201 * 359.74395 * 7 6 5 9 9 C 1.38532 * 120.26571 * 0.70071 * 8 7 6 10 10 O 1.35800 * 119.94223 * 179.75620 * 9 8 7 11 11 C 1.34811 * 117.00015 * 5.62138 * 10 9 8 12 12 H 1.07998 * 120.00300 * 354.93735 * 11 10 9 13 13 C 1.38640 * 119.99861 * 174.65925 * 11 10 9 14 14 N 1.31574 * 120.00143 * 0.27969 * 13 11 10 15 15 Si 1.86805 * 119.99997 * 180.27418 * 13 11 10 16 16 H 1.48507 * 109.46767 * 90.00128 * 15 13 11 17 17 H 1.48498 * 109.47292 * 210.00073 * 15 13 11 18 18 H 1.48498 * 109.46907 * 330.00584 * 15 13 11 19 19 C 1.38689 * 107.06414 * 15.14481 * 5 4 2 20 20 O 1.36180 * 111.26143 * 1.41916 * 19 5 4 21 21 H 1.09003 * 109.47048 * 296.77714 * 1 2 3 22 22 H 1.09002 * 109.46541 * 56.76995 * 1 2 3 23 23 H 1.08994 * 109.47277 * 176.76551 * 1 2 3 24 24 H 1.09002 * 109.47153 * 183.23540 * 3 2 1 25 25 H 1.09005 * 109.46543 * 303.22755 * 3 2 1 26 26 H 1.08995 * 109.47483 * 63.22371 * 3 2 1 27 27 H 1.08997 * 110.93787 * 334.94410 * 4 2 1 28 28 H 1.08999 * 110.93440 * 211.26858 * 4 2 1 29 29 H 1.08001 * 119.94324 * 359.14005 * 6 5 4 30 30 H 1.07995 * 120.08154 * 179.97438 * 7 6 5 31 31 H 1.07991 * 119.86943 * 180.43620 * 8 7 6 32 32 H 0.96999 * 119.99670 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0702 1.4314 0.0000 4 6 2.0782 -0.7928 1.2102 5 6 2.2646 -2.1773 0.6200 6 6 2.4525 -3.4129 1.2022 7 6 2.5796 -4.5411 0.4110 8 6 2.5124 -4.4273 -0.9646 9 6 2.3330 -3.1868 -1.5546 10 8 2.2729 -3.0819 -2.9072 11 6 2.2774 -4.2316 -3.6111 12 1 2.4095 -5.1754 -3.1030 13 6 2.1067 -4.2030 -4.9867 14 7 1.9458 -3.0532 -5.6058 15 14 2.1053 -5.7967 -5.9611 16 1 0.7189 -6.3216 -6.0494 17 1 2.6260 -5.5416 -7.3282 18 1 2.9697 -6.7939 -5.2802 19 6 2.2078 -2.0428 -0.7592 20 8 2.0396 -0.7410 -1.1219 21 1 -0.3633 0.4630 0.9175 22 1 -0.3632 0.5632 -0.8597 23 1 -0.3633 -1.0260 -0.0580 24 1 3.1585 1.4091 -0.0580 25 1 1.6716 1.9701 -0.8597 26 1 1.7654 1.9349 0.9174 27 1 1.3538 -0.8108 2.0244 28 1 3.0299 -0.3814 1.5465 29 1 2.5001 -3.5005 2.2776 30 1 2.7272 -5.5086 0.8676 31 1 2.6045 -5.3083 -1.5823 32 1 1.8260 -3.0333 -6.5682 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019476956.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:17 Heat of formation + Delta-G solvation = -36.518956 kcal Electronic energy + Delta-G solvation = -16412.954037 eV Core-core repulsion = 13725.790883 eV Total energy + Delta-G solvation = -2687.163154 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60842 -38.12714 -35.86706 -33.21751 -32.20008 -30.55967 -28.43362 -27.23960 -26.28732 -24.95830 -21.63360 -20.88934 -20.15003 -17.78352 -17.07495 -15.98314 -15.34075 -15.13520 -14.55639 -14.06525 -13.88901 -13.41903 -13.32598 -12.72477 -12.53523 -12.45612 -11.90057 -11.78852 -11.72879 -11.54453 -11.23962 -11.10775 -10.89533 -10.71670 -10.48875 -10.30544 -10.09553 -9.43149 -8.80070 -7.69812 -6.97086 -6.39318 -3.97104 2.08009 2.32768 3.15293 3.16044 3.20902 3.87160 3.99633 4.48129 4.79519 4.92361 5.06579 5.16383 5.27670 5.34457 5.65627 5.71095 5.77798 5.82028 5.85718 5.96825 5.97524 6.06133 6.22816 6.28683 6.45294 6.47823 6.68923 7.04143 7.13614 7.27782 7.34698 7.54501 7.98613 8.06757 9.04766 9.75828 10.78260 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.007713 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.506272 B = 3629.557558 C = 4324.831868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 C -0.138 4.138 4 C -0.095 4.095 5 C -0.137 4.137 6 C -0.167 4.167 7 C -0.097 4.097 8 C -0.213 4.213 9 C 0.144 3.856 10 O -0.171 6.171 11 C -0.393 4.393 12 H 0.092 0.908 13 C 0.039 3.961 14 N -0.859 5.859 15 Si 0.941 3.059 16 H -0.273 1.273 17 H -0.278 1.278 18 H -0.267 1.267 19 C 0.037 3.963 20 O -0.287 6.287 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 3.005 11.426 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.059 3.941 3 C -0.195 4.195 4 C -0.132 4.132 5 C -0.138 4.138 6 C -0.186 4.186 7 C -0.115 4.115 8 C -0.232 4.232 9 C 0.090 3.910 10 O -0.075 6.075 11 C -0.469 4.469 12 H 0.109 0.891 13 C -0.166 4.166 14 N -0.493 5.493 15 Si 0.765 3.235 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.008 4.008 20 O -0.203 6.203 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.153 0.847 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.012 3.407 10.802 11.372 hybrid contribution -0.035 -0.928 -0.348 0.992 sum -1.048 2.479 10.454 10.794 Atomic orbital electron populations 1.22159 0.94211 1.03183 1.02143 1.22590 0.94003 0.92718 0.84838 1.21788 1.01910 0.93361 1.02449 1.21783 1.01594 0.92037 0.97762 1.20307 1.06085 0.94738 0.92713 1.19747 1.09550 0.90876 0.98431 1.20643 1.00433 0.97357 0.93089 1.20862 1.10487 0.96858 0.95031 1.18622 0.97064 0.90102 0.85206 1.84069 1.79161 1.33166 1.11105 1.21341 1.51564 0.84442 0.89527 0.89068 1.25298 0.96538 0.98861 0.95867 1.70075 1.44799 1.24663 1.09794 0.85720 0.78804 0.80025 0.78905 1.19900 1.20267 1.19178 1.18564 1.06855 0.83928 0.91473 1.86967 1.80558 1.16400 1.36341 0.91548 0.91593 0.91773 0.91619 0.91507 0.91005 0.89992 0.89897 0.87456 0.86864 0.84728 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 8.86 37.16 0.33 -2.04 16 2 C 0.10 1.60 1.26 -89.72 -0.11 1.49 16 3 C -0.14 -1.80 8.95 37.16 0.33 -1.47 16 4 C -0.09 -1.45 6.18 -26.51 -0.16 -1.61 16 5 C -0.14 -2.66 6.26 -104.12 -0.65 -3.32 16 6 C -0.17 -3.01 10.03 -39.66 -0.40 -3.41 16 7 C -0.10 -1.82 10.06 -39.54 -0.40 -2.22 16 8 C -0.21 -4.77 9.14 -39.49 -0.36 -5.13 16 9 C 0.14 3.71 6.67 -38.85 -0.26 3.45 16 10 O -0.17 -5.17 9.76 -0.06 0.00 -5.17 16 11 C -0.39 -11.30 9.48 30.88 0.29 -11.01 16 12 H 0.09 2.40 5.19 -52.49 -0.27 2.12 16 13 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 14 N -0.86 -25.95 13.67 55.48 0.76 -25.20 16 15 Si 0.94 20.87 29.55 -169.99 -5.02 15.84 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 C 0.04 0.86 6.84 -38.79 -0.27 0.60 16 20 O -0.29 -6.56 10.54 -20.32 -0.21 -6.77 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 28 H 0.08 1.14 7.92 -51.93 -0.41 0.73 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.14 2.95 5.60 -52.49 -0.29 2.66 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 273.93 15.07 4.13 4.13 Total: -1.00 -32.77 273.93 -6.01 -38.78 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.90 Total: 2.06 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -1.75 Total: -23.68 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.76 Total: -25.20 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.21 Total: -11.94 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.77 -6.01 -38.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019476956.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.257 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds