Wall clock time and date at job start Sun Mar 29 2020 21:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.67513 * 2 1 4 4 C 1.54711 * 110.75185 * 123.22813 * 2 1 3 5 5 C 1.51657 * 101.94315 * 93.10624 * 4 2 1 6 6 C 1.37876 * 132.11250 * 195.60280 * 5 4 2 7 7 C 1.38381 * 120.11781 * 179.11274 * 6 5 4 8 8 C 1.38198 * 119.83201 * 359.74395 * 7 6 5 9 9 C 1.38532 * 120.26571 * 0.70071 * 8 7 6 10 10 O 1.35800 * 119.94223 * 179.75620 * 9 8 7 11 11 C 1.34811 * 117.00015 * 5.62138 * 10 9 8 12 12 H 1.07998 * 120.00300 * 354.93735 * 11 10 9 13 13 C 1.38640 * 119.99861 * 174.65925 * 11 10 9 14 14 N 1.31574 * 120.00143 * 0.27969 * 13 11 10 15 15 Si 1.86805 * 119.99997 * 180.27418 * 13 11 10 16 16 H 1.48507 * 109.46767 * 90.00128 * 15 13 11 17 17 H 1.48498 * 109.47292 * 210.00073 * 15 13 11 18 18 H 1.48498 * 109.46907 * 330.00584 * 15 13 11 19 19 C 1.38689 * 107.06414 * 15.14481 * 5 4 2 20 20 O 1.36180 * 111.26143 * 1.41916 * 19 5 4 21 21 H 1.09003 * 109.47048 * 296.77714 * 1 2 3 22 22 H 1.09002 * 109.46541 * 56.76995 * 1 2 3 23 23 H 1.08994 * 109.47277 * 176.76551 * 1 2 3 24 24 H 1.09002 * 109.47153 * 183.23540 * 3 2 1 25 25 H 1.09005 * 109.46543 * 303.22755 * 3 2 1 26 26 H 1.08995 * 109.47483 * 63.22371 * 3 2 1 27 27 H 1.08997 * 110.93787 * 334.94410 * 4 2 1 28 28 H 1.08999 * 110.93440 * 211.26858 * 4 2 1 29 29 H 1.08001 * 119.94324 * 359.14005 * 6 5 4 30 30 H 1.07995 * 120.08154 * 179.97438 * 7 6 5 31 31 H 1.07991 * 119.86943 * 180.43620 * 8 7 6 32 32 H 0.96999 * 119.99670 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0702 1.4314 0.0000 4 6 2.0782 -0.7928 1.2102 5 6 2.2646 -2.1773 0.6200 6 6 2.4525 -3.4129 1.2022 7 6 2.5796 -4.5411 0.4110 8 6 2.5124 -4.4273 -0.9646 9 6 2.3330 -3.1868 -1.5546 10 8 2.2729 -3.0819 -2.9072 11 6 2.2774 -4.2316 -3.6111 12 1 2.4095 -5.1754 -3.1030 13 6 2.1067 -4.2030 -4.9867 14 7 1.9458 -3.0532 -5.6058 15 14 2.1053 -5.7967 -5.9611 16 1 0.7189 -6.3216 -6.0494 17 1 2.6260 -5.5416 -7.3282 18 1 2.9697 -6.7939 -5.2802 19 6 2.2078 -2.0428 -0.7592 20 8 2.0396 -0.7410 -1.1219 21 1 -0.3633 0.4630 0.9175 22 1 -0.3632 0.5632 -0.8597 23 1 -0.3633 -1.0260 -0.0580 24 1 3.1585 1.4091 -0.0580 25 1 1.6716 1.9701 -0.8597 26 1 1.7654 1.9349 0.9174 27 1 1.3538 -0.8108 2.0244 28 1 3.0299 -0.3814 1.5465 29 1 2.5001 -3.5005 2.2776 30 1 2.7272 -5.5086 0.8676 31 1 2.6045 -5.3083 -1.5823 32 1 1.8260 -3.0333 -6.5682 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019476956.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:17 Heat of formation + Delta-G solvation = -58.606765 kcal Electronic energy + Delta-G solvation = -16413.911837 eV Core-core repulsion = 13725.790883 eV Total energy + Delta-G solvation = -2688.120954 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.14104 -39.93841 -37.56036 -34.65787 -34.17263 -32.06121 -30.15217 -28.36291 -27.88577 -26.79955 -23.24934 -22.57547 -21.52704 -19.66399 -18.86802 -17.57791 -16.95868 -16.68403 -16.25032 -15.62785 -15.45139 -15.25870 -14.64591 -14.37857 -14.06132 -13.67933 -13.53266 -13.27571 -13.01769 -12.86974 -12.79693 -12.67740 -12.40732 -12.20600 -12.05829 -11.71509 -11.55838 -11.34229 -10.81048 -9.30806 -8.74071 -8.46029 -6.13966 0.44986 0.66705 1.33210 1.43801 1.52060 2.17360 2.46017 2.78840 3.10838 3.36150 3.58211 3.75602 3.91967 4.10851 4.24283 4.31836 4.51892 4.57398 4.66018 4.72297 4.74584 4.81005 4.88896 5.03804 5.06961 5.12807 5.22901 5.30850 5.52892 5.58361 5.68180 5.94988 6.02068 6.44925 6.97126 7.80364 8.77688 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.007713 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.506272 B = 3629.557558 C = 4324.831868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.078 3.922 3 C -0.134 4.134 4 C -0.085 4.085 5 C -0.134 4.134 6 C -0.142 4.142 7 C -0.094 4.094 8 C -0.218 4.218 9 C 0.089 3.911 10 O -0.234 6.234 11 C -0.416 4.416 12 H 0.105 0.895 13 C -0.028 4.028 14 N -0.923 5.923 15 Si 1.023 2.977 16 H -0.262 1.262 17 H -0.271 1.271 18 H -0.249 1.249 19 C 0.008 3.992 20 O -0.333 6.333 21 H 0.111 0.889 22 H 0.055 0.945 23 H 0.036 0.964 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.129 0.871 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 2.307 15.268 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.041 3.959 3 C -0.190 4.190 4 C -0.121 4.121 5 C -0.135 4.135 6 C -0.161 4.161 7 C -0.112 4.112 8 C -0.237 4.237 9 C 0.039 3.961 10 O -0.142 6.142 11 C -0.492 4.492 12 H 0.122 0.878 13 C -0.224 4.224 14 N -0.562 5.562 15 Si 0.841 3.159 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.173 1.173 19 C -0.037 4.037 20 O -0.250 6.250 21 H 0.130 0.870 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.133 0.867 27 H 0.139 0.861 28 H 0.123 0.877 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.147 0.853 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.012 2.712 14.723 15.005 hybrid contribution -0.032 -0.605 -1.162 1.310 sum -1.044 2.107 13.561 13.763 Atomic orbital electron populations 1.22180 0.93343 1.01777 1.04075 1.23166 0.94958 0.93969 0.83775 1.21846 1.01456 0.91376 1.04366 1.21920 1.03723 0.88730 0.97751 1.20973 1.04001 0.97480 0.91091 1.20415 1.05130 0.89617 1.00912 1.21149 0.98813 0.99966 0.91299 1.21069 1.10169 0.95459 0.97042 1.19402 0.99633 0.92701 0.84388 1.84028 1.82589 1.34107 1.13461 1.21905 1.51876 0.85011 0.90371 0.87815 1.26701 0.95801 1.03211 0.96731 1.70245 1.48009 1.27767 1.10161 0.84539 0.79500 0.74878 0.76933 1.18726 1.19610 1.17272 1.19049 1.07504 0.83942 0.93210 1.86921 1.81274 1.16701 1.40061 0.87012 0.92587 0.94432 0.92141 0.92301 0.86654 0.86106 0.87659 0.82338 0.82468 0.85311 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 8.86 71.98 0.64 -3.79 16 2 C 0.08 2.47 1.26 -10.21 -0.01 2.46 16 3 C -0.13 -3.19 8.95 71.98 0.64 -2.55 16 4 C -0.08 -2.24 6.18 30.74 0.19 -2.05 16 5 C -0.13 -4.87 6.26 -19.54 -0.12 -4.99 16 6 C -0.14 -4.48 10.03 22.22 0.22 -4.26 16 7 C -0.09 -3.25 10.06 22.29 0.22 -3.02 16 8 C -0.22 -9.90 9.14 22.33 0.20 -9.70 16 9 C 0.09 4.83 6.67 22.74 0.15 4.98 16 10 O -0.23 -15.33 9.76 -23.09 -0.23 -15.56 16 11 C -0.42 -25.53 9.48 67.92 0.64 -24.88 16 12 H 0.10 5.75 5.19 -2.91 -0.02 5.73 16 13 C -0.03 -1.65 5.49 84.83 0.47 -1.18 16 14 N -0.92 -59.83 13.67 21.61 0.30 -59.53 16 15 Si 1.02 44.45 29.55 68.60 2.03 46.48 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 19 C 0.01 0.38 6.84 22.78 0.16 0.53 16 20 O -0.33 -15.83 10.54 -95.59 -1.01 -16.84 16 21 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.04 1.24 8.07 -2.39 -0.02 1.22 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.12 2.31 7.92 -2.39 -0.02 2.29 16 28 H 0.11 2.38 7.92 -2.39 -0.02 2.36 16 29 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.13 5.82 5.60 -2.91 -0.02 5.80 16 32 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -80.94 273.93 5.61 -75.32 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 1.12 Total: 18.59 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 3.41 Total: -48.46 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.30 Total: -59.53 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.23 Total: -32.40 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -80.94 5.61 -75.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019476956.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.717 kcal (2) G-P(sol) polarization free energy of solvation -80.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds