Wall clock time and date at job start Sun Mar 29 2020 21:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99939 * 2 1 4 4 H 1.07998 * 120.00212 * 200.37410 * 3 2 1 5 5 C 1.38812 * 120.00180 * 20.37579 * 3 2 1 6 6 N 1.31627 * 120.00033 * 14.96985 * 5 3 2 7 7 Si 1.86797 * 120.00200 * 194.97121 * 5 3 2 8 8 H 1.48505 * 109.46916 * 85.00274 * 7 5 3 9 9 H 1.48495 * 109.47408 * 204.99938 * 7 5 3 10 10 H 1.48500 * 109.47355 * 325.00516 * 7 5 3 11 11 C 1.46498 * 119.99981 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47376 * 270.00293 * 11 2 1 13 13 C 1.38345 * 119.86032 * 259.72432 * 12 11 2 14 14 C 1.37938 * 120.17900 * 179.76803 * 13 12 11 15 15 C 1.39652 * 119.89629 * 0.51013 * 14 13 12 16 16 C 1.43203 * 120.13566 * 179.73103 * 15 14 13 17 17 N 7.46386 * 104.57468 * 116.69867 * 2 1 3 18 18 C 1.39587 * 119.72509 * 359.74254 * 15 14 13 19 19 C 1.38201 * 119.81654 * 0.02562 * 18 15 14 20 20 F 1.35097 * 119.94639 * 179.97438 * 19 18 15 21 21 H 1.08999 * 109.47147 * 275.09005 * 1 2 3 22 22 H 1.09003 * 109.47203 * 35.09223 * 1 2 3 23 23 H 1.09003 * 109.46961 * 155.09194 * 1 2 3 24 24 H 0.96994 * 119.99962 * 180.02562 * 6 5 3 25 25 H 1.08999 * 109.46929 * 30.00875 * 11 2 1 26 26 H 1.09004 * 109.46888 * 150.00266 * 11 2 1 27 27 H 1.07999 * 119.91293 * 0.02562 * 13 12 11 28 28 H 1.07997 * 120.05231 * 180.25610 * 14 13 12 29 29 H 1.07990 * 120.08860 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2152 -0.3256 5 6 1.5208 2.3505 0.4186 6 7 0.3875 2.2835 1.0847 7 14 2.2827 4.0126 0.0364 8 1 1.8685 4.4463 -1.3222 9 1 1.8225 5.0097 1.0359 10 1 3.7626 3.9032 0.0913 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.6867 -1.4863 1.9995 14 6 3.9222 -1.8770 3.3013 15 6 2.9114 -2.5028 4.0340 16 6 3.1522 -2.9157 5.3838 17 7 3.3432 -3.2456 6.4535 18 6 1.6654 -2.7243 3.4449 19 6 1.4406 -2.3238 2.1415 20 9 0.2358 -2.5374 1.5686 21 1 -0.3633 0.0912 1.0236 22 1 -0.3634 0.8409 -0.5908 23 1 -0.3633 -0.9321 -0.4328 24 1 -0.0521 3.0973 1.3769 25 1 1.6085 -2.0285 -0.5131 26 1 3.1500 -1.1386 -0.5133 27 1 4.4696 -1.0060 1.4314 28 1 4.8882 -1.7030 3.7518 29 1 0.8794 -3.2074 4.0062 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045050225.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:34 Heat of formation + Delta-G solvation = 31.971346 kcal Electronic energy + Delta-G solvation = -15797.790526 eV Core-core repulsion = 13022.429780 eV Total energy + Delta-G solvation = -2775.360746 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.38960 -38.98864 -36.47964 -35.48616 -32.27873 -30.60689 -30.17208 -26.55616 -25.91933 -22.95367 -22.42991 -20.72267 -18.93480 -16.90493 -16.17298 -15.67445 -15.50820 -15.29894 -14.62041 -13.69520 -13.67182 -13.60722 -13.36702 -13.28336 -13.00530 -12.49959 -12.08660 -11.61872 -11.47487 -11.32498 -10.95352 -10.78750 -10.71972 -10.37329 -10.11504 -10.02330 -8.69513 -8.66930 -8.29373 -6.97695 -5.89143 -3.28880 0.95387 1.51699 2.76323 3.09299 3.31136 3.37181 3.38468 3.94840 4.05132 4.39073 4.78570 5.02831 5.17748 5.21164 5.41979 5.53764 5.62232 5.94182 5.99335 6.28713 6.35595 6.46441 6.50400 6.72358 6.82610 7.15244 7.28521 7.58715 7.62363 7.69819 8.20495 9.04885 9.67037 10.14982 11.14189 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.027170 B = 0.007724 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.319644 B = 3624.187677 C = 4058.138043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.582 5.582 3 C -0.257 4.257 4 H 0.075 0.925 5 C 0.005 3.995 6 N -0.895 5.895 7 Si 0.909 3.091 8 H -0.285 1.285 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.174 3.826 12 C -0.084 4.084 13 C -0.088 4.088 14 C -0.078 4.078 15 C -0.038 4.038 16 C 0.270 3.730 17 N -0.438 5.438 18 C -0.109 4.109 19 C 0.103 3.897 20 F -0.133 7.133 21 H 0.032 0.968 22 H 0.046 0.954 23 H 0.005 0.995 24 H 0.256 0.744 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -7.960 -0.378 8.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.301 5.301 3 C -0.386 4.386 4 H 0.093 0.907 5 C -0.195 4.195 6 N -0.538 5.538 7 Si 0.738 3.262 8 H -0.212 1.212 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.047 3.953 12 C -0.090 4.090 13 C -0.107 4.107 14 C -0.099 4.099 15 C -0.042 4.042 16 C -0.045 4.045 17 N -0.114 5.114 18 C -0.130 4.130 19 C 0.083 3.917 20 F -0.112 7.112 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.024 0.976 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.039 -8.271 1.255 9.290 hybrid contribution -0.072 1.213 -0.295 1.250 sum 3.967 -7.058 0.959 8.153 Atomic orbital electron populations 1.20910 0.81700 0.96018 0.99818 1.44355 1.02353 1.00225 1.83164 1.19324 0.97633 0.84455 1.37236 0.90721 1.25087 0.97761 0.98776 0.97904 1.70100 1.18345 1.27368 1.37965 0.86211 0.78761 0.83475 0.77735 1.21220 1.21632 1.20309 1.20103 0.97496 0.89033 0.88706 1.21611 0.92020 0.92703 1.02707 1.20793 0.96641 0.99037 0.94274 1.21096 0.97989 0.96693 0.94124 1.15483 0.95406 1.06461 0.86881 1.25666 0.93220 0.92955 0.92650 1.81181 1.08232 1.10147 1.11792 1.20903 0.96602 1.01670 0.93858 1.17195 0.81796 1.01222 0.91486 1.91490 1.42286 1.92830 1.84564 0.94977 0.93525 0.97632 0.93360 0.92569 0.91762 0.84541 0.85270 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 8.16 59.85 0.49 4.29 15 2 N -0.58 -13.66 2.91 -182.50 -0.53 -14.19 15 3 C -0.26 -6.55 9.68 -15.06 -0.15 -6.69 15 4 H 0.08 1.82 7.86 -52.49 -0.41 1.40 15 5 C 0.00 0.13 5.06 -17.43 -0.09 0.04 15 6 N -0.90 -25.03 10.67 55.49 0.59 -24.44 15 7 Si 0.91 20.77 29.58 -169.99 -5.03 15.74 15 8 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 11 C 0.17 3.24 5.55 -5.20 -0.03 3.22 15 12 C -0.08 -1.45 5.47 -104.47 -0.57 -2.02 15 13 C -0.09 -1.32 9.65 -39.65 -0.38 -1.71 15 14 C -0.08 -1.06 9.75 -39.16 -0.38 -1.44 15 15 C -0.04 -0.54 5.73 -106.94 -0.61 -1.15 15 16 C 0.27 3.99 15.33 -22.49 -0.34 3.65 15 17 N -0.44 -7.14 18.53 41.82 0.78 -6.36 15 18 C -0.11 -1.63 9.74 -39.09 -0.38 -2.01 15 19 C 0.10 1.78 7.23 -39.48 -0.29 1.49 15 20 F -0.13 -2.42 15.68 2.25 0.04 -2.39 15 21 H 0.03 0.84 7.40 -51.93 -0.38 0.45 15 22 H 0.05 1.19 7.21 -51.93 -0.37 0.81 15 23 H 0.01 0.11 7.74 -51.93 -0.40 -0.29 15 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 25 H 0.06 0.98 7.65 -51.93 -0.40 0.58 15 26 H 0.06 1.09 7.88 -51.93 -0.41 0.68 15 27 H 0.14 1.84 8.03 -52.49 -0.42 1.42 15 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 15 29 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 LS Contribution 268.24 15.07 4.04 4.04 Total: -1.00 -28.55 268.24 -5.63 -34.18 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: -2.78 Total: -4.23 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.73 Total: -2.35 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.84 Total: -45.00 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.55 -5.63 -34.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045050225.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.152 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds