Wall clock time and date at job start Sun Mar 29 2020 21:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99939 * 2 1 4 4 H 1.07998 * 120.00212 * 200.37410 * 3 2 1 5 5 C 1.38812 * 120.00180 * 20.37579 * 3 2 1 6 6 N 1.31627 * 120.00033 * 14.96985 * 5 3 2 7 7 Si 1.86797 * 120.00200 * 194.97121 * 5 3 2 8 8 H 1.48505 * 109.46916 * 85.00274 * 7 5 3 9 9 H 1.48495 * 109.47408 * 204.99938 * 7 5 3 10 10 H 1.48500 * 109.47355 * 325.00516 * 7 5 3 11 11 C 1.46498 * 119.99981 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47376 * 270.00293 * 11 2 1 13 13 C 1.38345 * 119.86032 * 259.72432 * 12 11 2 14 14 C 1.37938 * 120.17900 * 179.76803 * 13 12 11 15 15 C 1.39652 * 119.89629 * 0.51013 * 14 13 12 16 16 C 1.43203 * 120.13566 * 179.73103 * 15 14 13 17 17 N 7.46386 * 104.57468 * 116.69867 * 2 1 3 18 18 C 1.39587 * 119.72509 * 359.74254 * 15 14 13 19 19 C 1.38201 * 119.81654 * 0.02562 * 18 15 14 20 20 F 1.35097 * 119.94639 * 179.97438 * 19 18 15 21 21 H 1.08999 * 109.47147 * 275.09005 * 1 2 3 22 22 H 1.09003 * 109.47203 * 35.09223 * 1 2 3 23 23 H 1.09003 * 109.46961 * 155.09194 * 1 2 3 24 24 H 0.96994 * 119.99962 * 180.02562 * 6 5 3 25 25 H 1.08999 * 109.46929 * 30.00875 * 11 2 1 26 26 H 1.09004 * 109.46888 * 150.00266 * 11 2 1 27 27 H 1.07999 * 119.91293 * 0.02562 * 13 12 11 28 28 H 1.07997 * 120.05231 * 180.25610 * 14 13 12 29 29 H 1.07990 * 120.08860 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2152 -0.3256 5 6 1.5208 2.3505 0.4186 6 7 0.3875 2.2835 1.0847 7 14 2.2827 4.0126 0.0364 8 1 1.8685 4.4463 -1.3222 9 1 1.8225 5.0097 1.0359 10 1 3.7626 3.9032 0.0913 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.6867 -1.4863 1.9995 14 6 3.9222 -1.8770 3.3013 15 6 2.9114 -2.5028 4.0340 16 6 3.1522 -2.9157 5.3838 17 7 3.3432 -3.2456 6.4535 18 6 1.6654 -2.7243 3.4449 19 6 1.4406 -2.3238 2.1415 20 9 0.2358 -2.5374 1.5686 21 1 -0.3633 0.0912 1.0236 22 1 -0.3634 0.8409 -0.5908 23 1 -0.3633 -0.9321 -0.4328 24 1 -0.0521 3.0973 1.3769 25 1 1.6085 -2.0285 -0.5131 26 1 3.1500 -1.1386 -0.5133 27 1 4.4696 -1.0060 1.4314 28 1 4.8882 -1.7030 3.7518 29 1 0.8794 -3.2074 4.0062 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045050225.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:34 Heat of formation + Delta-G solvation = 16.869187 kcal Electronic energy + Delta-G solvation = -15798.445405 eV Core-core repulsion = 13022.429780 eV Total energy + Delta-G solvation = -2776.015625 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.75675 -40.25587 -37.87881 -37.05612 -33.88860 -32.12944 -31.48834 -28.14731 -27.73233 -24.46926 -23.69919 -22.32054 -20.19207 -18.71719 -17.51757 -17.09109 -16.90735 -16.69420 -16.20951 -15.35064 -15.06291 -14.94437 -14.85373 -14.67311 -14.40528 -13.88853 -13.56901 -13.09621 -12.99495 -12.77209 -12.71025 -12.42288 -12.21489 -12.02526 -11.89823 -11.80364 -10.61200 -9.90221 -9.58961 -8.83454 -7.80233 -5.25687 -0.27013 0.29161 1.51608 1.53457 1.54770 1.60689 1.86576 2.54677 2.70220 2.83755 3.35689 3.53176 3.83741 3.84929 4.01363 4.07540 4.36472 4.67233 4.73113 4.88296 4.97828 5.08041 5.16295 5.28235 5.35746 5.53410 5.67814 5.74990 5.89332 6.32478 6.37740 7.15223 7.86103 8.30598 9.23191 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.027170 B = 0.007724 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.319644 B = 3624.187677 C = 4058.138043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.603 5.603 3 C -0.257 4.257 4 H 0.086 0.914 5 C -0.052 4.052 6 N -0.937 5.937 7 Si 0.966 3.034 8 H -0.289 1.289 9 H -0.303 1.303 10 H -0.262 1.262 11 C 0.173 3.827 12 C -0.098 4.098 13 C -0.085 4.085 14 C -0.066 4.066 15 C -0.027 4.027 16 C 0.288 3.712 17 N -0.458 5.458 18 C -0.106 4.106 19 C 0.083 3.917 20 F -0.144 7.144 21 H 0.001 0.999 22 H 0.017 0.983 23 H 0.027 0.973 24 H 0.246 0.754 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.157 0.843 28 H 0.164 0.836 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.077 -8.941 0.023 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.324 5.324 3 C -0.387 4.387 4 H 0.104 0.896 5 C -0.247 4.247 6 N -0.583 5.583 7 Si 0.795 3.205 8 H -0.216 1.216 9 H -0.230 1.230 10 H -0.186 1.186 11 C 0.047 3.953 12 C -0.104 4.104 13 C -0.104 4.104 14 C -0.086 4.086 15 C -0.031 4.031 16 C -0.027 4.027 17 N -0.134 5.134 18 C -0.128 4.128 19 C 0.063 3.937 20 F -0.123 7.123 21 H 0.019 0.981 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.174 0.826 28 H 0.181 0.819 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.209 -9.317 1.668 11.319 hybrid contribution -0.624 1.245 -0.357 1.437 sum 5.585 -8.072 1.312 9.903 Atomic orbital electron populations 1.20538 0.82735 0.95728 0.97483 1.44338 1.02039 1.01405 1.84612 1.19653 0.97769 0.85404 1.35887 0.89644 1.25749 0.98475 1.01699 0.98761 1.70272 1.20265 1.27099 1.40701 0.85299 0.78735 0.79831 0.76684 1.21560 1.22985 1.18649 1.20179 0.97933 0.87311 0.89893 1.21559 0.93354 0.94050 1.01406 1.21076 0.96203 0.98170 0.94933 1.21448 0.99059 0.94726 0.93382 1.15567 0.95323 1.05624 0.86551 1.25532 0.92510 0.92290 0.92322 1.81223 1.08991 1.10717 1.12430 1.21078 0.97439 1.01051 0.93202 1.17464 0.81511 1.02244 0.92433 1.91461 1.42986 1.93023 1.84836 0.98096 0.96428 0.95439 0.94487 0.91655 0.89885 0.82550 0.81868 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.75 8.16 127.77 1.04 9.80 15 2 N -0.60 -28.06 2.91 -731.31 -2.13 -30.19 15 3 C -0.26 -12.95 9.68 84.03 0.81 -12.14 15 4 H 0.09 4.00 7.86 -2.91 -0.02 3.98 15 5 C -0.05 -2.75 5.06 84.86 0.43 -2.32 15 6 N -0.94 -54.08 10.67 21.65 0.23 -53.84 15 7 Si 0.97 43.01 29.58 68.60 2.03 45.04 15 8 H -0.29 -12.80 7.11 99.48 0.71 -12.10 15 9 H -0.30 -13.94 7.11 99.48 0.71 -13.24 15 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 11 C 0.17 6.15 5.55 85.63 0.48 6.63 15 12 C -0.10 -3.21 5.47 -19.76 -0.11 -3.32 15 13 C -0.08 -2.26 9.65 22.22 0.21 -2.04 15 14 C -0.07 -1.51 9.75 22.54 0.22 -1.29 15 15 C -0.03 -0.67 5.73 -21.37 -0.12 -0.79 15 16 C 0.29 7.61 15.33 88.34 1.35 8.97 15 17 N -0.46 -13.72 18.53 19.00 0.35 -13.36 15 18 C -0.11 -2.94 9.74 22.59 0.22 -2.72 15 19 C 0.08 2.74 7.23 22.34 0.16 2.90 15 20 F -0.14 -5.18 15.68 44.97 0.71 -4.47 15 21 H 0.00 0.04 7.40 -2.39 -0.02 0.02 15 22 H 0.02 0.91 7.21 -2.39 -0.02 0.89 15 23 H 0.03 1.16 7.74 -2.39 -0.02 1.14 15 24 H 0.25 13.98 8.31 -92.71 -0.77 13.21 15 25 H 0.07 2.17 7.65 -2.39 -0.02 2.15 15 26 H 0.08 2.61 7.88 -2.38 -0.02 2.59 15 27 H 0.16 3.55 8.03 -2.91 -0.02 3.53 15 28 H 0.16 2.71 8.06 -2.91 -0.02 2.69 15 29 H 0.15 3.61 8.06 -2.92 -0.02 3.58 15 Total: -1.00 -61.89 268.24 7.06 -54.83 By element: Atomic # 1 Polarization: -2.83 SS G_CDS: 1.17 Total: -1.67 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 4.70 Total: 3.66 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -1.55 Total: -97.40 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.71 Total: -4.47 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -61.89 7.06 -54.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045050225.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.700 kcal (2) G-P(sol) polarization free energy of solvation -61.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds