Wall clock time and date at job start Sun Mar 29 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38351 * 119.46003 * 2 1 4 4 C 1.38357 * 119.30107 * 179.97438 * 3 2 1 5 5 C 1.40020 * 118.29059 * 0.02562 * 4 3 2 6 6 C 1.47847 * 120.56116 * 179.97438 * 5 4 3 7 7 O 1.21549 * 119.99766 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99972 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99943 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.47078 * 34.99474 * 9 8 6 11 11 C 1.53000 * 109.47021 * 275.00054 * 9 8 6 12 12 C 1.50694 * 109.47115 * 154.99835 * 9 8 6 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.39523 * 118.88049 * 0.25044 * 5 4 3 21 21 N 1.31693 * 120.56647 * 359.45700 * 20 5 4 22 22 H 1.08997 * 109.47211 * 90.00051 * 1 2 3 23 23 H 1.08994 * 109.47012 * 210.00100 * 1 2 3 24 24 H 1.09008 * 109.47033 * 329.99735 * 1 2 3 25 25 H 1.08001 * 120.34956 * 0.02562 * 3 2 1 26 26 H 1.08004 * 120.85772 * 180.02562 * 4 3 2 27 27 H 0.96997 * 119.99849 * 359.97438 * 8 6 5 28 28 H 1.08998 * 109.47089 * 59.99825 * 11 9 8 29 29 H 1.08995 * 109.47131 * 179.97438 * 11 9 8 30 30 H 1.09002 * 109.47106 * 299.99878 * 11 9 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 32 32 H 1.08002 * 119.71283 * 179.74117 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2312 -0.0340 0.0005 6 6 5.7084 -0.0967 0.0005 7 8 6.3601 0.9293 0.0010 8 7 6.3322 -1.2914 0.0000 9 6 7.7958 -1.3535 0.0005 10 1 8.1943 -0.5281 0.5907 11 6 8.3112 -1.2485 -1.4362 12 6 8.2428 -2.6617 0.6003 13 1 7.5101 -3.3753 0.9469 14 6 9.5876 -2.9471 0.7076 15 7 10.4800 -2.0779 0.2861 16 14 10.1417 -4.5684 1.4518 17 1 11.6254 -4.6314 1.4522 18 1 9.6410 -4.6699 2.8461 19 1 9.5992 -5.6930 0.6480 20 6 3.4716 -1.2043 -0.0054 21 7 2.1558 -1.1487 -0.0001 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6444 2.1381 0.0004 26 1 4.1276 2.1264 0.0010 27 1 5.8120 -2.1101 0.0000 28 1 7.9879 -0.3023 -1.8700 29 1 9.4002 -1.2943 -1.4358 30 1 7.9128 -2.0738 -2.0264 31 1 11.4259 -2.2785 0.3619 32 1 3.9669 -2.1640 -0.0097 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050335983.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:35 Heat of formation + Delta-G solvation = -12.694747 kcal Electronic energy + Delta-G solvation = -15738.417116 eV Core-core repulsion = 13084.579808 eV Total energy + Delta-G solvation = -2653.837308 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.41361 -38.49965 -34.90122 -33.17170 -32.48359 -32.12817 -29.33378 -27.50068 -25.27701 -23.74031 -22.93668 -21.04795 -19.63733 -17.98441 -16.62032 -16.15770 -15.53963 -15.09735 -14.74817 -14.57551 -14.07356 -13.86544 -13.13985 -13.00693 -12.53352 -12.40753 -12.37687 -12.05626 -11.71042 -11.12073 -10.97678 -10.78499 -10.36319 -10.25394 -9.85724 -9.75943 -9.10502 -9.08839 -8.95250 -8.57437 -7.98120 -6.14101 -4.23800 0.76448 1.24262 3.25399 3.27215 3.30739 3.32128 3.93525 4.07185 4.18463 4.35724 4.64468 4.90177 4.94873 5.18180 5.26960 5.35351 5.39759 5.45341 5.58888 5.83744 6.07575 6.19802 6.59060 6.80127 6.93195 7.11219 7.37760 7.51219 7.66064 7.86942 7.88657 8.11547 8.57415 8.73261 9.00983 9.43476 10.91903 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.043508 B = 0.005407 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.411980 B = 5177.367007 C = 5628.707248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.135 3.865 3 C -0.182 4.182 4 C -0.020 4.020 5 C -0.179 4.179 6 C 0.547 3.453 7 O -0.549 6.549 8 N -0.699 5.699 9 C 0.264 3.736 10 H 0.051 0.949 11 C -0.147 4.147 12 C -0.536 4.536 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.883 5.883 16 Si 0.903 3.097 17 H -0.286 1.286 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.136 3.864 21 N -0.490 5.490 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.138 0.862 26 H 0.146 0.854 27 H 0.388 0.612 28 H 0.015 0.985 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.265 0.735 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.971 3.064 -1.095 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.003 4.003 3 C -0.202 4.202 4 C -0.046 4.046 5 C -0.184 4.184 6 C 0.331 3.669 7 O -0.429 6.429 8 N -0.347 5.347 9 C 0.162 3.838 10 H 0.069 0.931 11 C -0.206 4.206 12 C -0.574 4.574 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.520 5.520 16 Si 0.730 3.270 17 H -0.211 1.211 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.023 4.023 21 N -0.199 5.199 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.156 0.844 26 H 0.164 0.836 27 H 0.222 0.778 28 H 0.034 0.966 29 H 0.110 0.890 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.716 3.026 -1.106 16.043 hybrid contribution 0.677 -0.498 0.359 0.913 sum -15.039 2.528 -0.748 15.269 Atomic orbital electron populations 1.20739 0.88770 1.03518 1.03130 1.21467 0.97126 0.88491 0.93170 1.21922 0.94579 0.99336 1.04340 1.21749 0.93848 0.98272 0.90777 1.21355 0.95907 0.95196 1.05969 1.18020 0.85958 0.84940 0.77990 1.90728 1.66733 1.34070 1.51372 1.46513 1.10652 1.06203 1.71326 1.18813 0.72608 0.98150 0.94189 0.93133 1.22083 1.04543 0.96751 0.97212 1.21165 0.92289 1.02272 1.41718 0.92032 1.24884 0.96379 0.97263 0.95091 1.69893 1.01514 1.34933 1.45708 0.86485 0.77552 0.83251 0.79686 1.21107 1.20143 1.20107 1.23030 0.89135 0.97949 0.92163 1.67519 1.09736 1.29085 1.13589 0.90280 0.90361 0.90656 0.84419 0.83591 0.77820 0.96600 0.89003 0.95349 0.92464 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.16 36.01 0.37 -0.48 16 2 C 0.13 1.62 6.78 -82.51 -0.56 1.06 16 3 C -0.18 -2.10 9.72 -39.50 -0.38 -2.48 16 4 C -0.02 -0.29 9.72 -38.87 -0.38 -0.66 16 5 C -0.18 -2.95 5.89 -104.82 -0.62 -3.57 16 6 C 0.55 11.27 7.75 -12.33 -0.10 11.18 16 7 O -0.55 -13.27 16.08 5.32 0.09 -13.19 16 8 N -0.70 -14.74 5.02 -55.88 -0.28 -15.02 16 9 C 0.26 6.73 2.56 -69.09 -0.18 6.55 16 10 H 0.05 1.48 7.58 -51.92 -0.39 1.09 16 11 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 12 C -0.54 -14.15 8.73 -34.44 -0.30 -14.45 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 15 N -0.88 -24.77 11.32 55.43 0.63 -24.14 16 16 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.14 2.01 10.71 -17.13 -0.18 1.82 16 21 N -0.49 -6.97 10.25 -9.14 -0.09 -7.06 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.46 8.07 -51.92 -0.42 0.04 16 25 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 26 H 0.15 2.03 7.74 -52.48 -0.41 1.62 16 27 H 0.39 7.02 6.61 -40.82 -0.27 6.75 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.16 2.10 6.42 -52.49 -0.34 1.76 16 LS Contribution 279.28 15.07 4.21 4.21 Total: -1.00 -31.13 279.28 -6.35 -37.47 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.80 Total: 4.85 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.08 Total: -2.65 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.25 Total: -46.22 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.13 -6.35 -37.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050335983.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.779 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds