Wall clock time and date at job start Sun Mar 29 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38351 * 119.46003 * 2 1 4 4 C 1.38357 * 119.30107 * 179.97438 * 3 2 1 5 5 C 1.40020 * 118.29059 * 0.02562 * 4 3 2 6 6 C 1.47847 * 120.56116 * 179.97438 * 5 4 3 7 7 O 1.21549 * 119.99766 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99972 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99943 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.47078 * 34.99474 * 9 8 6 11 11 C 1.53000 * 109.47021 * 275.00054 * 9 8 6 12 12 C 1.50694 * 109.47115 * 154.99835 * 9 8 6 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.39523 * 118.88049 * 0.25044 * 5 4 3 21 21 N 1.31693 * 120.56647 * 359.45700 * 20 5 4 22 22 H 1.08997 * 109.47211 * 90.00051 * 1 2 3 23 23 H 1.08994 * 109.47012 * 210.00100 * 1 2 3 24 24 H 1.09008 * 109.47033 * 329.99735 * 1 2 3 25 25 H 1.08001 * 120.34956 * 0.02562 * 3 2 1 26 26 H 1.08004 * 120.85772 * 180.02562 * 4 3 2 27 27 H 0.96997 * 119.99849 * 359.97438 * 8 6 5 28 28 H 1.08998 * 109.47089 * 59.99825 * 11 9 8 29 29 H 1.08995 * 109.47131 * 179.97438 * 11 9 8 30 30 H 1.09002 * 109.47106 * 299.99878 * 11 9 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 32 32 H 1.08002 * 119.71283 * 179.74117 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2312 -0.0340 0.0005 6 6 5.7084 -0.0967 0.0005 7 8 6.3601 0.9293 0.0010 8 7 6.3322 -1.2914 0.0000 9 6 7.7958 -1.3535 0.0005 10 1 8.1943 -0.5281 0.5907 11 6 8.3112 -1.2485 -1.4362 12 6 8.2428 -2.6617 0.6003 13 1 7.5101 -3.3753 0.9469 14 6 9.5876 -2.9471 0.7076 15 7 10.4800 -2.0779 0.2861 16 14 10.1417 -4.5684 1.4518 17 1 11.6254 -4.6314 1.4522 18 1 9.6410 -4.6699 2.8461 19 1 9.5992 -5.6930 0.6480 20 6 3.4716 -1.2043 -0.0054 21 7 2.1558 -1.1487 -0.0001 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6444 2.1381 0.0004 26 1 4.1276 2.1264 0.0010 27 1 5.8120 -2.1101 0.0000 28 1 7.9879 -0.3023 -1.8700 29 1 9.4002 -1.2943 -1.4358 30 1 7.9128 -2.0738 -2.0264 31 1 11.4259 -2.2785 0.3619 32 1 3.9669 -2.1640 -0.0097 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050335983.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:35 Heat of formation + Delta-G solvation = -33.957489 kcal Electronic energy + Delta-G solvation = -15739.339138 eV Core-core repulsion = 13084.579808 eV Total energy + Delta-G solvation = -2654.759330 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.61725 -40.05817 -36.80971 -34.61491 -33.91216 -33.33372 -31.06563 -28.64309 -27.35456 -24.88521 -24.21021 -22.63100 -21.35483 -19.57771 -17.93197 -17.81745 -16.96342 -16.60819 -16.20382 -16.04519 -15.48240 -15.17443 -14.59069 -14.38748 -14.14056 -13.74455 -13.26476 -13.14144 -13.05468 -12.93051 -12.87371 -12.75068 -12.28861 -12.16545 -11.20635 -11.12112 -10.95038 -10.62426 -10.45631 -10.09394 -9.77035 -8.18642 -6.36586 -0.37413 0.18551 1.45712 1.47796 1.55606 1.88340 2.29323 2.51602 2.81672 3.12027 3.20975 3.72272 3.80750 3.86012 4.04915 4.32655 4.61694 4.72041 4.74304 4.84078 4.89232 5.04012 5.07891 5.12239 5.18859 5.39331 5.54682 5.61602 5.65362 5.85732 6.06154 6.69008 6.80610 6.86400 7.26914 7.42391 8.87705 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.043508 B = 0.005407 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.411980 B = 5177.367007 C = 5628.707248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.138 3.862 3 C -0.169 4.169 4 C -0.028 4.028 5 C -0.204 4.204 6 C 0.546 3.454 7 O -0.594 6.594 8 N -0.696 5.696 9 C 0.269 3.731 10 H 0.002 0.998 11 C -0.134 4.134 12 C -0.550 4.550 13 H 0.074 0.926 14 C 0.016 3.984 15 N -0.917 5.917 16 Si 0.974 3.026 17 H -0.286 1.286 18 H -0.271 1.271 19 H -0.263 1.263 20 C 0.138 3.862 21 N -0.505 5.505 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.103 0.897 25 H 0.179 0.821 26 H 0.143 0.857 27 H 0.404 0.596 28 H 0.012 0.988 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.649 2.230 -0.893 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 C -0.188 4.188 4 C -0.054 4.054 5 C -0.210 4.210 6 C 0.334 3.666 7 O -0.477 6.477 8 N -0.345 5.345 9 C 0.166 3.834 10 H 0.020 0.980 11 C -0.193 4.193 12 C -0.588 4.588 13 H 0.092 0.908 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.798 3.202 17 H -0.211 1.211 18 H -0.196 1.196 19 H -0.188 1.188 20 C -0.020 4.020 21 N -0.215 5.215 22 H 0.114 0.886 23 H 0.097 0.903 24 H 0.122 0.878 25 H 0.196 0.804 26 H 0.161 0.839 27 H 0.240 0.760 28 H 0.031 0.969 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -18.440 2.171 -0.908 18.590 hybrid contribution 1.372 -0.151 0.290 1.410 sum -17.069 2.021 -0.618 17.199 Atomic orbital electron populations 1.20897 0.85562 1.04971 1.04550 1.22260 0.99181 0.87965 0.90524 1.22304 0.93174 1.01027 1.02329 1.21909 0.95358 0.97357 0.90795 1.20994 0.92942 0.97092 1.09924 1.18625 0.87839 0.83838 0.76326 1.90691 1.68282 1.35398 1.53343 1.46237 1.09093 1.07445 1.71699 1.18434 0.75052 0.96344 0.93555 0.98015 1.21905 1.03060 0.97054 0.97251 1.21494 0.92927 1.02563 1.41830 0.90760 1.25800 0.96454 1.00797 0.95364 1.70044 1.01792 1.36924 1.46714 0.85368 0.76886 0.78970 0.78940 1.21103 1.19610 1.18804 1.23117 0.89570 0.97684 0.91600 1.67639 1.09079 1.30367 1.14428 0.88629 0.90348 0.87839 0.80351 0.83883 0.75982 0.96907 0.91193 0.93955 0.92449 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.16 71.24 0.72 -0.50 16 2 C 0.14 2.86 6.78 42.57 0.29 3.15 16 3 C -0.17 -3.36 9.72 22.32 0.22 -3.14 16 4 C -0.03 -0.77 9.72 22.73 0.22 -0.55 16 5 C -0.20 -6.70 5.89 -19.99 -0.12 -6.82 16 6 C 0.55 23.26 7.75 86.79 0.67 23.93 16 7 O -0.59 -30.14 16.08 -3.87 -0.06 -30.20 16 8 N -0.70 -30.04 5.02 -448.98 -2.26 -32.29 16 9 C 0.27 14.22 2.56 44.24 0.11 14.33 16 10 H 0.00 0.12 7.58 -2.38 -0.02 0.10 16 11 C -0.13 -6.89 9.26 71.98 0.67 -6.22 16 12 C -0.55 -29.28 8.73 25.60 0.22 -29.06 16 13 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 14 C 0.02 0.87 5.30 84.66 0.45 1.32 16 15 N -0.92 -52.64 11.32 21.45 0.24 -52.40 16 16 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 17 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 20 C 0.14 3.95 10.71 85.02 0.91 4.86 16 21 N -0.51 -13.27 10.25 -182.81 -1.87 -15.14 16 22 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.10 0.70 8.07 -2.38 -0.02 0.68 16 25 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 26 H 0.14 3.96 7.74 -2.91 -0.02 3.94 16 27 H 0.40 14.63 6.61 -92.71 -0.61 14.02 16 28 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.17 4.30 6.42 -2.91 -0.02 4.28 16 Total: -1.00 -69.25 279.28 2.97 -66.28 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.52 Total: 18.46 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 4.37 Total: 1.31 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -3.89 Total: -99.83 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.06 Total: -30.20 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -69.25 2.97 -66.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050335983.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.327 kcal (2) G-P(sol) polarization free energy of solvation -69.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds