Wall clock time and date at job start Sun Mar 29 2020 22:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38635 * 120.46845 * 2 1 4 4 C 1.38586 * 118.48460 * 179.97438 * 3 2 1 5 5 C 1.38598 * 119.35436 * 359.97438 * 4 3 2 6 6 N 1.31501 * 120.90279 * 359.97438 * 5 4 3 7 7 C 1.32746 * 121.63915 * 0.02562 * 6 5 4 8 8 C 1.48168 * 119.71910 * 179.97438 * 7 6 5 9 9 O 1.21520 * 119.99773 * 185.80627 * 8 7 6 10 10 N 1.34771 * 120.00048 * 5.80814 * 8 7 6 11 11 C 1.46505 * 119.99841 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47161 * 34.99934 * 11 10 8 13 13 C 1.53005 * 109.46853 * 274.99871 * 11 10 8 14 14 C 1.50697 * 109.47091 * 155.00067 * 11 10 8 15 15 H 1.08004 * 120.00199 * 359.97438 * 14 11 10 16 16 C 1.37882 * 120.00081 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99783 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 120.00046 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46665 * 60.00175 * 18 16 14 20 20 H 1.48493 * 109.46989 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47035 * 300.00406 * 18 16 14 22 22 H 1.08995 * 109.46950 * 96.72057 * 1 2 3 23 23 H 1.09007 * 109.46699 * 216.71965 * 1 2 3 24 24 H 1.09003 * 109.46901 * 336.71829 * 1 2 3 25 25 H 1.07991 * 120.75462 * 359.95670 * 3 2 1 26 26 H 1.07998 * 120.32209 * 179.97438 * 4 3 2 27 27 H 1.07997 * 119.55357 * 180.02562 * 5 4 3 28 28 H 0.96994 * 120.00404 * 359.97438 * 10 8 7 29 29 H 1.08994 * 109.47194 * 59.99861 * 13 11 10 30 30 H 1.09004 * 109.47011 * 180.02562 * 13 11 10 31 31 H 1.09004 * 109.47144 * 299.99649 * 13 11 10 32 32 H 0.96998 * 119.99798 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1469 0.0005 5 6 4.2322 -0.0839 0.0016 6 7 3.5407 -1.2024 0.0026 7 6 2.2132 -1.2004 0.0021 8 6 1.4767 -2.4860 0.0027 9 8 0.2663 -2.4928 -0.1042 10 7 2.1493 -3.6479 0.1219 11 6 1.4209 -4.9190 0.1230 12 1 0.5654 -4.8482 -0.5486 13 6 0.9328 -5.2258 1.5403 14 6 2.3355 -6.0224 -0.3431 15 1 3.3570 -5.7990 -0.6136 16 6 1.8682 -7.3171 -0.4242 17 7 0.6242 -7.5889 -0.0954 18 14 3.0016 -8.6846 -1.0027 19 1 4.1679 -8.7808 -0.0884 20 1 2.2634 -9.9731 -1.0014 21 1 3.4745 -8.3869 -2.3786 22 1 -0.3633 -0.1203 -1.0206 23 1 -0.3633 -0.8238 0.6145 24 1 -0.3633 0.9440 0.4062 25 1 1.6901 2.1414 -0.0007 26 1 4.1722 2.0597 0.0001 27 1 5.3114 -0.1250 0.0025 28 1 3.1155 -3.6425 0.2068 29 1 0.2714 -4.4277 1.8774 30 1 0.3913 -6.1718 1.5413 31 1 1.7884 -5.2967 2.2119 32 1 0.2954 -8.4997 -0.1528 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051812999.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:56 Heat of formation + Delta-G solvation = -28.243064 kcal Electronic energy + Delta-G solvation = -16044.302275 eV Core-core repulsion = 13389.790741 eV Total energy + Delta-G solvation = -2654.511534 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.65784 -39.84324 -36.85764 -34.79120 -34.04483 -32.98755 -30.82609 -28.29086 -27.35953 -25.62564 -23.49395 -22.69856 -21.34086 -19.54703 -17.98744 -17.68321 -16.95473 -16.34119 -16.30459 -16.15831 -15.44776 -14.73013 -14.59358 -14.34427 -13.99000 -13.77002 -13.63742 -13.31327 -12.98919 -12.88492 -12.83777 -12.65419 -12.29592 -12.14352 -11.15570 -10.96634 -10.73420 -10.61279 -10.28439 -10.06498 -9.67141 -8.19028 -6.36743 -0.27174 0.29925 1.43772 1.46596 1.54555 1.87282 2.31427 2.52593 2.91227 3.10890 3.31609 3.83926 3.90098 4.04058 4.09695 4.55240 4.60175 4.71776 4.79761 4.81251 4.89488 5.04650 5.12547 5.19741 5.33802 5.43283 5.58710 5.66318 5.76105 5.87015 6.06638 6.68830 6.73094 7.01561 7.28139 7.45495 8.87319 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.039822 B = 0.006148 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.958881 B = 4553.511588 C = 5061.179123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.083 4.083 4 C -0.130 4.130 5 C 0.079 3.921 6 N -0.483 5.483 7 C 0.045 3.955 8 C 0.545 3.455 9 O -0.575 6.575 10 N -0.688 5.688 11 C 0.269 3.731 12 H 0.004 0.996 13 C -0.132 4.132 14 C -0.551 4.551 15 H 0.068 0.932 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.975 3.025 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.272 1.272 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.178 0.822 26 H 0.186 0.814 27 H 0.192 0.808 28 H 0.406 0.594 29 H 0.014 0.986 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.059 17.929 0.971 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.109 4.109 4 C -0.149 4.149 5 C -0.082 4.082 6 N -0.194 5.194 7 C -0.091 4.091 8 C 0.331 3.669 9 O -0.457 6.457 10 N -0.336 5.336 11 C 0.166 3.834 12 H 0.022 0.978 13 C -0.191 4.191 14 C -0.589 4.589 15 H 0.086 0.914 16 C -0.184 4.184 17 N -0.554 5.554 18 Si 0.799 3.201 19 H -0.189 1.189 20 H -0.207 1.207 21 H -0.197 1.197 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.110 0.890 25 H 0.195 0.805 26 H 0.204 0.796 27 H 0.209 0.791 28 H 0.241 0.759 29 H 0.033 0.967 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.478 16.879 0.916 18.102 hybrid contribution 0.129 -0.393 -0.253 0.485 sum 6.607 16.486 0.663 17.773 Atomic orbital electron populations 1.20948 0.89350 1.03519 1.03029 1.21155 0.98618 0.92937 0.96508 1.21975 0.94859 0.97832 0.96226 1.22845 0.95023 1.00630 0.96411 1.23479 1.01860 0.87247 0.95572 1.67494 1.06829 1.34250 1.10863 1.20907 0.90601 0.93181 1.04405 1.18582 0.86779 0.84420 0.77110 1.90653 1.14668 1.87431 1.52908 1.46242 1.11410 1.05916 1.69996 1.18451 0.91668 0.79740 0.93573 0.97848 1.21889 0.99059 1.00729 0.97376 1.21477 0.98349 0.92835 1.46281 0.91427 1.25800 0.96775 1.01025 0.94763 1.70033 1.16391 1.21059 1.47874 0.85358 0.78519 0.77299 0.78924 1.18925 1.20686 1.19684 0.91414 0.91503 0.88952 0.80509 0.79645 0.79110 0.75895 0.96680 0.91002 0.94435 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.19 8.74 71.24 0.62 -2.57 16 2 C -0.09 -2.56 5.93 -19.52 -0.12 -2.68 16 3 C -0.08 -1.54 9.83 22.45 0.22 -1.32 16 4 C -0.13 -1.96 10.11 22.44 0.23 -1.74 16 5 C 0.08 1.66 11.18 84.83 0.95 2.61 16 6 N -0.48 -15.39 9.56 -184.91 -1.77 -17.15 16 7 C 0.05 1.64 6.75 41.89 0.28 1.92 16 8 C 0.54 24.92 7.71 86.88 0.67 25.59 16 9 O -0.58 -29.12 12.97 -3.78 -0.05 -29.17 16 10 N -0.69 -32.96 5.06 -448.66 -2.27 -35.23 16 11 C 0.27 14.92 2.56 44.25 0.11 15.03 16 12 H 0.00 0.23 7.58 -2.39 -0.02 0.21 16 13 C -0.13 -7.04 9.26 71.98 0.67 -6.37 16 14 C -0.55 -31.01 8.73 25.60 0.22 -30.78 16 15 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 16 C 0.02 0.92 5.30 84.66 0.45 1.37 16 17 N -0.92 -53.69 11.32 21.45 0.24 -53.45 16 18 Si 0.97 43.38 29.54 68.60 2.03 45.40 16 19 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 23 H 0.07 2.42 5.85 -2.38 -0.01 2.40 16 24 H 0.09 1.85 8.05 -2.39 -0.02 1.83 16 25 H 0.18 1.83 8.06 -2.92 -0.02 1.81 16 26 H 0.19 1.03 8.06 -2.91 -0.02 1.00 16 27 H 0.19 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.41 17.96 7.88 -92.71 -0.73 17.23 16 29 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 4.11 6.07 -2.38 -0.01 4.10 16 31 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -71.31 275.95 2.89 -68.42 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.40 Total: 20.12 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 4.31 Total: 1.06 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -3.79 Total: -105.83 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.05 Total: -29.17 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -71.31 2.89 -68.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051812999.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.172 kcal (2) G-P(sol) polarization free energy of solvation -71.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds