Wall clock time and date at job start Sun Mar 29 2020 21:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00259 * 2 1 4 4 H 1.48501 * 109.46976 * 240.00202 * 3 2 1 5 5 H 1.48493 * 109.47056 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46832 * 120.00141 * 3 2 1 7 7 C 1.37877 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00192 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00191 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46698 * 180.02562 * 11 10 9 13 13 C 1.38247 * 119.92634 * 270.01805 * 12 11 10 14 14 C 1.38240 * 120.14459 * 179.75199 * 13 12 11 15 15 C 1.38552 * 120.02633 * 0.42901 * 14 13 12 16 16 C 1.39265 * 119.82706 * 359.57585 * 15 14 13 17 17 C 1.38231 * 119.92969 * 90.00217 * 12 11 10 18 18 O 1.36496 * 108.64230 * 180.24572 * 16 15 14 19 19 C 1.43981 * 105.48444 * 342.72036 * 18 16 15 20 20 O 1.36505 * 131.53353 * 179.87931 * 15 14 13 21 21 H 0.96997 * 119.99757 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47166 * 60.00336 * 9 7 2 23 23 H 1.08992 * 109.47472 * 299.99928 * 9 7 2 24 24 H 1.08993 * 109.46930 * 60.00418 * 10 9 7 25 25 H 1.08996 * 109.47059 * 299.99667 * 10 9 7 26 26 H 1.08993 * 109.47027 * 60.00417 * 11 10 9 27 27 H 1.08998 * 109.46716 * 300.00181 * 11 10 9 28 28 H 1.07994 * 119.93290 * 0.02562 * 13 12 11 29 29 H 1.07997 * 119.99327 * 180.33354 * 14 13 12 30 30 H 1.08003 * 119.98943 * 0.02562 * 17 12 11 31 31 H 1.09007 * 110.56955 * 268.54960 * 19 18 16 32 32 H 1.09003 * 110.57719 * 145.67764 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4801 -4.9872 -0.0025 12 6 2.4594 -6.1326 -0.0031 13 6 2.9078 -6.6560 -1.2015 14 6 3.8100 -7.7033 -1.2074 15 6 4.2604 -8.2371 -0.0108 16 6 3.8087 -7.7099 1.1965 17 6 2.9076 -6.6575 1.1946 18 8 4.3965 -8.3962 2.2195 19 6 4.8952 -9.6117 1.6304 20 8 5.1313 -9.2539 0.2559 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 2.8725 -3.6049 0.8877 25 1 2.8711 -3.6041 -0.8923 26 1 0.8531 -5.0442 -0.8922 27 1 0.8538 -5.0454 0.8877 28 1 2.5559 -6.2429 -2.1352 29 1 4.1628 -8.1068 -2.1450 30 1 2.5555 -6.2468 2.1294 31 1 4.1493 -10.4038 1.6973 32 1 5.8243 -9.9175 2.1115 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082531847.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:03 Heat of formation + Delta-G solvation = -57.804788 kcal Electronic energy + Delta-G solvation = -15461.570322 eV Core-core repulsion = 12773.484144 eV Total energy + Delta-G solvation = -2688.086177 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.14654 -38.27822 -36.30340 -34.46816 -32.43624 -30.48809 -29.87791 -26.93856 -25.62591 -23.64356 -22.90839 -21.57285 -20.09107 -17.91693 -17.49834 -17.34728 -16.35015 -15.99447 -14.67559 -14.47914 -14.44780 -13.85362 -13.72874 -13.32565 -13.08916 -13.01108 -12.45942 -12.19839 -11.72271 -11.32361 -11.02992 -10.97643 -10.73077 -10.49388 -10.44681 -9.66947 -9.33726 -9.09576 -8.73123 -8.32430 -7.92006 -5.97912 -4.00081 1.21115 1.28859 2.73028 3.35230 3.39094 3.39358 3.42235 3.65356 4.48137 4.51900 4.53577 4.73571 5.05977 5.14910 5.16022 5.33746 5.37873 5.53449 5.77928 6.03263 6.08531 6.13723 6.25183 6.32429 6.50536 6.55602 6.86358 6.89673 7.11958 7.17395 7.69755 7.84259 8.02436 8.45389 9.06968 9.63928 11.13366 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.049754 B = 0.004238 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.638223 B = 6605.203188 C = 6706.271221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.104 4.104 11 C -0.082 4.082 12 C -0.052 4.052 13 C -0.110 4.110 14 C -0.097 4.097 15 C 0.011 3.989 16 C 0.031 3.969 17 C -0.099 4.099 18 O -0.311 6.311 19 C 0.214 3.786 20 O -0.313 6.313 21 H 0.261 0.739 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 -18.356 0.540 19.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.142 4.142 11 C -0.119 4.119 12 C -0.052 4.052 13 C -0.128 4.128 14 C -0.115 4.115 15 C -0.032 4.032 16 C -0.013 4.013 17 C -0.118 4.118 18 O -0.228 6.228 19 C 0.102 3.898 20 O -0.230 6.230 21 H 0.070 0.930 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.098 0.902 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.435 -18.304 0.647 19.413 hybrid contribution 0.623 0.704 0.178 0.956 sum 7.058 -17.600 0.825 18.980 Atomic orbital electron populations 1.69954 1.06038 1.26670 1.50935 1.25017 0.94838 0.99206 0.95359 0.86669 0.79595 0.83180 0.78633 1.20245 1.21302 1.20264 1.21236 0.93034 0.91141 1.50512 0.92768 1.19122 0.93995 0.91273 0.97276 1.21656 0.99049 0.92781 1.00710 1.20802 0.95888 0.92262 1.02987 1.19981 0.97611 0.96208 0.91418 1.20904 0.97603 0.95686 0.98649 1.20045 0.98526 0.98087 0.94859 1.19748 0.94857 0.93488 0.95150 1.19780 0.98194 0.98205 0.85130 1.20038 0.96516 0.95606 0.99636 1.87349 1.71437 1.32213 1.31763 1.25545 1.00313 0.87276 0.76704 1.87322 1.55864 1.50555 1.29268 0.92979 0.96518 0.96543 0.93213 0.93134 0.90815 0.91051 0.84329 0.85023 0.84693 0.90247 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.11 5.14 -26.72 -0.14 -2.25 16 11 C -0.08 -1.33 5.34 -27.88 -0.15 -1.48 16 12 C -0.05 -0.77 5.13 -104.62 -0.54 -1.30 16 13 C -0.11 -1.46 9.69 -39.58 -0.38 -1.84 16 14 C -0.10 -1.23 10.06 -39.46 -0.40 -1.63 16 15 C 0.01 0.16 7.15 -39.08 -0.28 -0.12 16 16 C 0.03 0.45 7.15 -39.08 -0.28 0.17 16 17 C -0.10 -1.46 9.71 -39.47 -0.38 -1.85 16 18 O -0.31 -4.22 11.40 -45.68 -0.52 -4.75 16 19 C 0.21 2.11 8.89 101.05 0.90 3.01 16 20 O -0.31 -4.05 11.40 -45.70 -0.52 -4.57 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 27 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 28 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.14 1.87 8.06 -52.48 -0.42 1.44 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 280.00 15.07 4.22 4.22 Total: -1.00 -31.66 280.00 -7.49 -39.15 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -4.19 Total: -4.07 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -2.20 Total: -20.49 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -1.04 Total: -9.32 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.66 -7.49 -39.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082531847.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.656 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds