Wall clock time and date at job start Sun Mar 29 2020 21:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00259 * 2 1 4 4 H 1.48501 * 109.46976 * 240.00202 * 3 2 1 5 5 H 1.48493 * 109.47056 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46832 * 120.00141 * 3 2 1 7 7 C 1.37877 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00192 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00191 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46698 * 180.02562 * 11 10 9 13 13 C 1.38247 * 119.92634 * 270.01805 * 12 11 10 14 14 C 1.38240 * 120.14459 * 179.75199 * 13 12 11 15 15 C 1.38552 * 120.02633 * 0.42901 * 14 13 12 16 16 C 1.39265 * 119.82706 * 359.57585 * 15 14 13 17 17 C 1.38231 * 119.92969 * 90.00217 * 12 11 10 18 18 O 1.36496 * 108.64230 * 180.24572 * 16 15 14 19 19 C 1.43981 * 105.48444 * 342.72036 * 18 16 15 20 20 O 1.36505 * 131.53353 * 179.87931 * 15 14 13 21 21 H 0.96997 * 119.99757 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47166 * 60.00336 * 9 7 2 23 23 H 1.08992 * 109.47472 * 299.99928 * 9 7 2 24 24 H 1.08993 * 109.46930 * 60.00418 * 10 9 7 25 25 H 1.08996 * 109.47059 * 299.99667 * 10 9 7 26 26 H 1.08993 * 109.47027 * 60.00417 * 11 10 9 27 27 H 1.08998 * 109.46716 * 300.00181 * 11 10 9 28 28 H 1.07994 * 119.93290 * 0.02562 * 13 12 11 29 29 H 1.07997 * 119.99327 * 180.33354 * 14 13 12 30 30 H 1.08003 * 119.98943 * 0.02562 * 17 12 11 31 31 H 1.09007 * 110.56955 * 268.54960 * 19 18 16 32 32 H 1.09003 * 110.57719 * 145.67764 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4801 -4.9872 -0.0025 12 6 2.4594 -6.1326 -0.0031 13 6 2.9078 -6.6560 -1.2015 14 6 3.8100 -7.7033 -1.2074 15 6 4.2604 -8.2371 -0.0108 16 6 3.8087 -7.7099 1.1965 17 6 2.9076 -6.6575 1.1946 18 8 4.3965 -8.3962 2.2195 19 6 4.8952 -9.6117 1.6304 20 8 5.1313 -9.2539 0.2559 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 2.8725 -3.6049 0.8877 25 1 2.8711 -3.6041 -0.8923 26 1 0.8531 -5.0442 -0.8922 27 1 0.8538 -5.0454 0.8877 28 1 2.5559 -6.2429 -2.1352 29 1 4.1628 -8.1068 -2.1450 30 1 2.5555 -6.2468 2.1294 31 1 4.1493 -10.4038 1.6973 32 1 5.8243 -9.9175 2.1115 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082531847.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:02 Heat of formation + Delta-G solvation = -76.192891 kcal Electronic energy + Delta-G solvation = -15462.367690 eV Core-core repulsion = 12773.484144 eV Total energy + Delta-G solvation = -2688.883545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.10478 -39.36916 -37.27109 -36.19592 -34.28978 -31.70564 -31.20989 -28.44610 -26.67618 -25.28587 -23.93841 -22.93114 -21.74489 -18.89021 -18.66411 -18.31899 -18.20690 -17.09921 -16.50084 -15.89463 -15.43905 -15.11575 -14.82677 -14.63889 -14.37431 -14.20866 -13.97996 -13.54823 -13.15552 -13.05387 -12.58916 -12.55880 -12.39689 -12.07365 -11.63946 -11.41391 -11.29470 -11.05815 -10.51873 -9.81296 -8.97863 -8.17472 -6.28159 0.14137 0.24061 1.41337 1.44000 1.51972 1.80374 2.42679 2.53955 2.58775 3.15491 3.50380 3.82525 3.86764 4.06299 4.09891 4.26612 4.32861 4.42733 4.57598 4.59193 4.79086 4.99620 5.06886 5.11959 5.21612 5.29006 5.33316 5.46812 5.56970 5.61532 5.83171 5.90376 6.14905 6.29459 6.88917 7.40811 8.93812 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.049754 B = 0.004238 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.638223 B = 6605.203188 C = 6706.271221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.091 4.091 11 C -0.071 4.071 12 C -0.064 4.064 13 C -0.107 4.107 14 C -0.095 4.095 15 C 0.006 3.994 16 C 0.016 3.984 17 C -0.111 4.111 18 O -0.328 6.328 19 C 0.204 3.796 20 O -0.323 6.323 21 H 0.263 0.737 22 H -0.002 1.002 23 H -0.007 1.007 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.736 -19.108 0.042 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.583 4.583 8 H 0.075 0.925 9 C -0.015 4.015 10 C -0.129 4.129 11 C -0.108 4.108 12 C -0.065 4.065 13 C -0.125 4.125 14 C -0.113 4.113 15 C -0.038 4.038 16 C -0.028 4.028 17 C -0.130 4.130 18 O -0.245 6.245 19 C 0.094 3.906 20 O -0.240 6.240 21 H 0.072 0.928 22 H 0.016 0.984 23 H 0.011 0.989 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.175 0.825 29 H 0.176 0.824 30 H 0.152 0.848 31 H 0.121 0.879 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.789 -19.078 0.154 20.607 hybrid contribution 0.222 0.844 0.360 0.944 sum 8.012 -18.234 0.514 19.923 Atomic orbital electron populations 1.70080 1.07684 1.27776 1.51732 1.25939 0.95753 1.03184 0.94793 0.85555 0.78342 0.78371 0.79121 1.19162 1.20740 1.19423 1.21706 0.93482 0.92664 1.50496 0.92516 1.19044 0.94460 0.92812 0.95151 1.21425 0.97916 0.92996 1.00529 1.20587 0.95905 0.90844 1.03480 1.19801 0.98076 0.96357 0.92241 1.21140 0.97130 0.95447 0.98751 1.20345 0.97850 0.97508 0.95639 1.20018 0.94781 0.93666 0.95351 1.19900 0.98512 0.98489 0.85903 1.20106 0.97010 0.96063 0.99772 1.87317 1.71496 1.33513 1.32210 1.26104 1.02716 0.86372 0.75431 1.87299 1.55693 1.50187 1.30823 0.92779 0.98390 0.98856 0.93735 0.92843 0.89925 0.91106 0.82459 0.82389 0.84761 0.87861 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.09 -3.70 5.14 30.60 0.16 -3.54 16 11 C -0.07 -2.28 5.34 29.85 0.16 -2.12 16 12 C -0.06 -1.84 5.13 -19.86 -0.10 -1.95 16 13 C -0.11 -2.62 9.69 22.27 0.22 -2.40 16 14 C -0.10 -2.21 10.06 22.35 0.22 -1.98 16 15 C 0.01 0.16 7.15 22.59 0.16 0.32 16 16 C 0.02 0.46 7.15 22.59 0.16 0.62 16 17 C -0.11 -3.23 9.71 22.34 0.22 -3.01 16 18 O -0.33 -8.53 11.40 -76.01 -0.87 -9.40 16 19 C 0.20 3.57 8.89 113.37 1.01 4.58 16 20 O -0.32 -7.67 11.40 -76.10 -0.87 -8.54 16 21 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 22 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 23 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.08 2.49 8.08 -2.39 -0.02 2.47 16 27 H 0.07 2.26 8.08 -2.39 -0.02 2.24 16 28 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 29 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 31 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -67.83 280.00 4.73 -63.10 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.10 Total: 3.56 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 3.05 Total: -38.74 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.28 Total: -56.54 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -1.73 Total: -17.94 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -67.83 4.73 -63.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082531847.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.093 kcal (2) G-P(sol) polarization free energy of solvation -67.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds