Wall clock time and date at job start Sun Mar 29 2020 21:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38254 * 119.88610 * 269.72097 * 10 9 7 12 12 C 1.38349 * 120.21053 * 179.75598 * 11 10 9 13 13 C 1.38458 * 119.71098 * 0.51269 * 12 11 10 14 14 C 1.38744 * 120.07665 * 359.77528 * 13 12 11 15 15 C 1.38338 * 119.89317 * 89.99937 * 10 9 7 16 16 O 1.36462 * 119.62409 * 179.97438 * 14 13 12 17 17 C 1.42911 * 115.92377 * 68.31384 * 16 14 13 18 18 C 1.52064 * 110.77101 * 275.60558 * 17 16 14 19 19 C 1.52068 * 112.37328 * 64.79239 * 18 17 16 20 20 O 1.36475 * 120.31805 * 179.74445 * 13 12 11 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08000 * 119.89824 * 359.97438 * 11 10 9 25 25 H 1.08000 * 120.14209 * 180.24478 * 12 11 10 26 26 H 1.08000 * 120.14148 * 359.94803 * 15 10 9 27 27 H 1.09003 * 109.21824 * 35.93719 * 17 16 14 28 28 H 1.09002 * 109.21961 * 155.27025 * 17 16 14 29 29 H 1.08998 * 108.90267 * 185.53917 * 18 17 16 30 30 H 1.08993 * 108.90040 * 304.14646 * 18 17 16 31 31 H 1.09001 * 109.21365 * 55.51092 * 19 18 17 32 32 H 1.09000 * 109.21331 * 174.84206 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2439 -3.2601 1.2116 12 6 4.7002 -4.5661 1.2240 13 6 4.9360 -5.2220 0.0276 14 6 4.7108 -4.5725 -1.1775 15 6 4.2486 -3.2674 -1.1864 16 8 4.9468 -5.2276 -2.3512 17 6 4.0643 -6.3111 -2.6504 18 6 4.5306 -7.5896 -1.9720 19 6 4.4736 -7.4940 -0.4553 20 8 5.3912 -6.5086 0.0254 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 4.0635 -2.7442 2.1431 25 1 4.8758 -5.0704 2.1628 26 1 4.0719 -2.7609 -2.1238 27 1 3.0618 -6.0644 -2.3005 28 1 4.0390 -6.4659 -3.7291 29 1 3.8964 -8.4139 -2.2979 30 1 5.5579 -7.7945 -2.2730 31 1 3.4628 -7.2225 -0.1508 32 1 4.7293 -8.4623 -0.0251 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082531848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:07 Heat of formation + Delta-G solvation = -57.914919 kcal Electronic energy + Delta-G solvation = -16206.179062 eV Core-core repulsion = 13518.088109 eV Total energy + Delta-G solvation = -2688.090953 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.49380 -37.51313 -37.17254 -33.51566 -32.52411 -30.92612 -29.61446 -27.21971 -26.22212 -23.02600 -22.26920 -21.44221 -20.31967 -18.07339 -16.83355 -16.64112 -16.43597 -15.21358 -15.07679 -14.59569 -14.05943 -13.89345 -13.73090 -13.50956 -13.03311 -12.55111 -12.08174 -11.93172 -11.62250 -11.33102 -11.04647 -10.75158 -10.46255 -10.35848 -10.20728 -10.01686 -9.54864 -9.42808 -8.62988 -8.30337 -7.75190 -6.12240 -4.12095 1.60664 1.74032 3.26454 3.34418 3.36881 3.69330 3.73913 4.35079 4.37699 4.65502 4.76154 5.11921 5.19466 5.25974 5.31561 5.39593 5.54902 5.62687 5.69509 5.84403 5.92761 5.96485 5.98117 6.26512 6.75221 6.76121 6.82125 6.92574 7.14376 7.35054 7.47802 7.62701 7.92919 8.43252 8.91808 9.47627 11.00535 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.041287 B = 0.006229 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.018767 B = 4494.352052 C = 4684.060059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.019 4.019 11 C -0.113 4.113 12 C -0.116 4.116 13 C 0.035 3.965 14 C 0.062 3.938 15 C -0.117 4.117 16 O -0.323 6.323 17 C 0.059 3.941 18 C -0.184 4.184 19 C 0.058 3.942 20 O -0.322 6.322 21 H 0.265 0.735 22 H 0.027 0.973 23 H 0.032 0.968 24 H 0.129 0.871 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.300 -12.368 -1.646 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.019 4.019 11 C -0.131 4.131 12 C -0.135 4.135 13 C -0.009 4.009 14 C 0.019 3.981 15 C -0.136 4.136 16 O -0.239 6.239 17 C -0.016 4.016 18 C -0.222 4.222 19 C -0.017 4.017 20 O -0.239 6.239 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.147 0.853 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.451 -12.288 -1.726 15.013 hybrid contribution -0.093 0.685 -0.064 0.694 sum 8.358 -11.603 -1.789 14.411 Atomic orbital electron populations 1.69894 1.06278 1.27072 1.50453 1.24993 0.94750 0.99063 0.94361 0.86803 0.80414 0.83574 0.78732 1.20090 1.21201 1.18838 1.20902 0.88097 0.94709 1.51636 0.90826 1.18842 0.97569 0.88142 0.97763 1.20241 0.92191 0.98102 0.91348 1.21036 0.99641 0.93811 0.98657 1.20985 1.00309 0.95685 0.96502 1.18964 1.03886 0.85418 0.92627 1.19109 1.01655 0.92813 0.84542 1.21021 0.99530 0.93607 0.99422 1.86323 1.54433 1.46429 1.36753 1.22568 0.92864 0.85710 1.00469 1.22448 1.03855 0.99056 0.96801 1.22577 0.93543 0.91980 0.93595 1.86353 1.39628 1.13394 1.84542 0.92529 0.95516 0.94970 0.85267 0.85579 0.85067 0.92351 0.88340 0.89672 0.90222 0.92541 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.33 9.65 -34.44 -0.33 -14.66 16 8 H 0.07 2.24 7.98 -52.49 -0.42 1.82 16 9 C 0.01 0.33 4.17 -29.03 -0.12 0.21 16 10 C -0.02 -0.39 5.07 -104.58 -0.53 -0.92 16 11 C -0.11 -2.12 9.69 -39.53 -0.38 -2.50 16 12 C -0.12 -1.98 10.01 -39.46 -0.39 -2.38 16 13 C 0.03 0.61 5.73 -39.31 -0.23 0.39 16 14 C 0.06 1.17 5.73 -39.31 -0.23 0.94 16 15 C -0.12 -2.34 9.66 -39.46 -0.38 -2.72 16 16 O -0.32 -5.59 10.16 -36.68 -0.37 -5.96 16 17 C 0.06 0.77 6.51 36.68 0.24 1.01 16 18 C -0.18 -2.02 5.92 -27.68 -0.16 -2.18 16 19 C 0.06 0.71 6.51 36.68 0.24 0.95 16 20 O -0.32 -5.25 10.17 -36.72 -0.37 -5.62 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.03 0.61 7.52 -51.93 -0.39 0.22 16 23 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 24 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 25 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 26 H 0.13 2.54 8.06 -52.49 -0.42 2.12 16 27 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 28 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.70 7.93 -51.93 -0.41 0.29 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 270.17 15.07 4.07 4.07 Total: -1.00 -31.17 270.17 -7.08 -38.25 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -4.13 Total: -0.79 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -2.38 Total: -19.96 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.32 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.75 Total: -11.58 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.17 -7.08 -38.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082531848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.670 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds