Wall clock time and date at job start Sun Mar 29 2020 22:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38625 * 120.32014 * 2 1 4 4 C 1.38596 * 118.48723 * 179.72546 * 3 2 1 5 5 C 1.39305 * 119.05580 * 0.49459 * 4 3 2 6 6 C 1.48176 * 119.72235 * 179.76951 * 5 4 3 7 7 O 1.21512 * 119.99932 * 359.72728 * 6 5 4 8 8 N 1.34775 * 119.99800 * 179.72469 * 6 5 4 9 9 C 1.46506 * 119.99693 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46660 * 35.00912 * 9 8 6 11 11 C 1.52997 * 109.47289 * 275.00198 * 9 8 6 12 12 C 1.50708 * 109.46796 * 155.00272 * 9 8 6 13 13 H 1.07995 * 119.99755 * 0.02562 * 12 9 8 14 14 C 1.37873 * 119.99729 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99909 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99980 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46921 * 60.00420 * 16 14 12 18 18 H 1.48496 * 109.46933 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46946 * 300.00103 * 16 14 12 20 20 N 1.32716 * 120.55690 * 359.49863 * 5 4 3 21 21 C 1.31523 * 121.64385 * 0.24804 * 20 5 4 22 22 H 1.09002 * 109.47133 * 270.01909 * 1 2 3 23 23 H 1.09003 * 109.47560 * 30.02482 * 1 2 3 24 24 H 1.09005 * 109.47294 * 150.02302 * 1 2 3 25 25 H 1.07998 * 120.75847 * 359.97438 * 3 2 1 26 26 H 1.08000 * 120.47241 * 180.26733 * 4 3 2 27 27 H 0.97000 * 120.00190 * 0.02562 * 8 6 5 28 28 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 29 29 H 1.09001 * 109.46832 * 60.00146 * 11 9 8 30 30 H 1.09004 * 109.47261 * 300.00128 * 11 9 8 31 31 H 0.97002 * 119.99804 * 180.02562 * 15 14 12 32 32 H 1.07997 * 119.55555 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1966 0.0000 4 6 3.5920 1.1523 0.0058 5 6 4.2293 -0.0864 0.0010 6 6 5.7097 -0.1510 0.0019 7 8 6.3625 0.8739 0.0019 8 7 6.3320 -1.3465 0.0028 9 6 7.7956 -1.4103 0.0032 10 1 8.1951 -0.5848 0.5923 11 6 8.3110 -1.3078 -1.4337 12 6 8.2412 -2.7184 0.6046 13 1 7.5075 -3.4309 0.9513 14 6 9.5855 -3.0053 0.7120 15 7 10.4789 -2.1372 0.2902 16 14 10.1378 -4.6263 1.4581 17 1 9.5940 -5.7513 0.6557 18 1 11.6214 -4.6905 1.4595 19 1 9.6372 -4.7255 2.8526 20 7 3.5217 -1.2092 0.0009 21 6 2.2066 -1.1960 0.0005 22 1 -0.3633 0.0003 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6845 2.1419 -0.0004 26 1 4.1692 2.0651 0.0104 27 1 5.8108 -2.1646 0.0025 28 1 9.4000 -1.3548 -1.4334 29 1 7.9887 -0.3617 -1.8686 30 1 7.9115 -2.1333 -2.0228 31 1 11.4246 -2.3392 0.3654 32 1 1.6645 -2.1301 0.0008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121242810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:07 Heat of formation + Delta-G solvation = -35.112548 kcal Electronic energy + Delta-G solvation = -15731.994356 eV Core-core repulsion = 13077.184939 eV Total energy + Delta-G solvation = -2654.809417 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.59049 -39.98619 -36.80231 -34.84267 -34.15614 -32.91603 -31.03450 -28.41578 -27.36566 -24.83278 -24.23339 -22.66287 -21.32535 -19.66254 -17.95951 -17.80597 -16.95039 -16.27461 -16.12238 -16.06945 -15.59038 -14.97146 -14.68558 -14.41817 -14.09928 -13.77178 -13.46173 -13.24379 -13.03260 -12.88818 -12.76432 -12.62766 -12.30567 -12.16707 -11.22977 -11.16589 -10.84998 -10.62155 -10.46232 -10.03678 -9.72621 -8.19209 -6.37271 -0.34414 0.27375 1.44120 1.47126 1.55060 1.79987 2.29203 2.50161 2.88238 3.10752 3.25274 3.86095 3.87152 3.97343 4.03286 4.32109 4.67894 4.70724 4.85784 4.87656 4.90367 5.02093 5.06472 5.21326 5.29701 5.37575 5.55478 5.63094 5.69459 5.84612 6.04844 6.67054 6.68366 6.96976 7.26250 7.42229 8.87330 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.043809 B = 0.005413 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.978192 B = 5171.075903 C = 5617.688129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C -0.081 4.081 4 C -0.118 4.118 5 C 0.048 3.952 6 C 0.548 3.452 7 O -0.591 6.591 8 N -0.685 5.685 9 C 0.266 3.734 10 H 0.003 0.997 11 C -0.132 4.132 12 C -0.551 4.551 13 H 0.069 0.931 14 C 0.017 3.983 15 N -0.916 5.916 16 Si 0.976 3.024 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.271 1.271 20 N -0.478 5.478 21 C 0.087 3.913 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.177 0.823 26 H 0.140 0.860 27 H 0.408 0.592 28 H 0.072 0.928 29 H 0.013 0.987 30 H 0.039 0.961 31 H 0.267 0.733 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.070 2.064 -0.838 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C -0.107 4.107 4 C -0.139 4.139 5 C -0.089 4.089 6 C 0.333 3.667 7 O -0.472 6.472 8 N -0.332 5.332 9 C 0.163 3.837 10 H 0.021 0.979 11 C -0.191 4.191 12 C -0.589 4.589 13 H 0.087 0.913 14 C -0.184 4.184 15 N -0.554 5.554 16 Si 0.800 3.200 17 H -0.189 1.189 18 H -0.207 1.207 19 H -0.196 1.196 20 N -0.189 5.189 21 C -0.074 4.074 22 H 0.109 0.891 23 H 0.105 0.895 24 H 0.106 0.894 25 H 0.194 0.806 26 H 0.158 0.842 27 H 0.244 0.756 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -19.868 1.996 -0.858 19.987 hybrid contribution 0.407 -0.087 0.302 0.514 sum -19.462 1.908 -0.556 19.563 Atomic orbital electron populations 1.20875 0.86542 1.04951 1.04118 1.21625 0.99918 0.93152 0.96126 1.21904 0.91945 1.00520 0.96284 1.22226 0.96594 0.97875 0.97209 1.20957 0.92748 0.91262 1.03910 1.18595 0.87330 0.83945 0.76782 1.90681 1.67385 1.35419 1.53762 1.46229 1.08947 1.07844 1.70192 1.18496 0.75063 0.96417 0.93688 0.97892 1.21893 1.03112 0.96984 0.97109 1.21465 0.92956 1.02579 1.41925 0.91275 1.25812 0.96265 1.00974 0.95321 1.70040 1.01774 1.36929 1.46673 0.85338 0.76976 0.78774 0.78887 1.18866 1.20722 1.19630 1.67486 1.10450 1.30280 1.10693 1.23358 0.88276 0.99924 0.95824 0.89134 0.89507 0.89402 0.80566 0.84203 0.75645 0.90918 0.96836 0.94238 0.92349 0.79226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.03 71.23 0.71 -0.11 16 2 C -0.11 -1.79 5.91 -19.70 -0.12 -1.91 16 3 C -0.08 -1.57 9.85 22.45 0.22 -1.34 16 4 C -0.12 -3.44 9.63 22.61 0.22 -3.22 16 5 C 0.05 1.73 6.75 41.91 0.28 2.02 16 6 C 0.55 25.54 7.78 86.88 0.68 26.21 16 7 O -0.59 -31.37 15.99 -3.75 -0.06 -31.43 16 8 N -0.69 -33.05 5.06 -448.65 -2.27 -35.32 16 9 C 0.27 14.91 2.56 44.25 0.11 15.03 16 10 H 0.00 0.21 7.58 -2.39 -0.02 0.19 16 11 C -0.13 -7.13 9.26 71.98 0.67 -6.46 16 12 C -0.55 -31.01 8.73 25.60 0.22 -30.79 16 13 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 14 C 0.02 0.92 5.30 84.65 0.45 1.37 16 15 N -0.92 -53.86 11.32 21.45 0.24 -53.62 16 16 Si 0.98 43.32 29.54 68.60 2.03 45.34 16 17 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 N -0.48 -15.28 9.54 -184.91 -1.76 -17.04 16 21 C 0.09 1.90 10.86 84.82 0.92 2.82 16 22 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 23 H 0.09 0.45 8.09 -2.39 -0.02 0.43 16 24 H 0.09 0.47 8.09 -2.38 -0.02 0.45 16 25 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 26 H 0.14 4.17 7.64 -2.91 -0.02 4.14 16 27 H 0.41 18.01 7.87 -92.71 -0.73 17.28 16 28 H 0.07 4.19 6.07 -2.39 -0.01 4.17 16 29 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -72.26 281.36 2.94 -69.32 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.40 Total: 19.14 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 4.37 Total: 3.60 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -3.79 Total: -105.98 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.06 Total: -31.43 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.26 2.94 -69.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121242810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.208 kcal (2) G-P(sol) polarization free energy of solvation -72.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds