Wall clock time and date at job start Sun Mar 29 2020 21:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00351 * 2 1 4 4 H 1.48501 * 109.47167 * 269.99556 * 3 2 1 5 5 H 1.48504 * 109.46951 * 29.99733 * 3 2 1 6 6 H 1.48501 * 109.47422 * 149.99660 * 3 2 1 7 7 C 1.38817 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99987 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00182 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99914 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46508 * 109.47135 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99852 * 179.97438 * 12 11 10 14 14 O 1.21557 * 120.00061 * 0.02562 * 13 12 11 15 15 C 1.47845 * 119.99555 * 180.02562 * 13 12 11 16 16 C 1.39575 * 120.13807 * 180.02562 * 15 13 12 17 17 C 1.37966 * 119.85100 * 179.97438 * 16 15 13 18 18 C 1.38359 * 120.14194 * 359.97438 * 17 16 15 19 19 C 1.38356 * 120.29572 * 0.04433 * 18 17 16 20 20 C 1.37965 * 120.14354 * 359.95888 * 19 18 17 21 21 H 0.97001 * 119.99913 * 0.02562 * 1 2 3 22 22 H 0.97002 * 120.00019 * 0.02562 * 9 7 2 23 23 H 1.09002 * 109.47170 * 59.99859 * 10 9 7 24 24 H 1.08999 * 109.47764 * 300.00008 * 10 9 7 25 25 H 1.08996 * 109.46951 * 60.00588 * 11 10 9 26 26 H 1.08996 * 109.47668 * 300.00178 * 11 10 9 27 27 H 0.97002 * 119.99932 * 0.02562 * 12 11 10 28 28 H 1.07998 * 120.08057 * 359.70005 * 16 15 13 29 29 H 1.08000 * 119.93085 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.85292 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.93259 * 179.97438 * 19 18 17 32 32 H 1.08003 * 120.07139 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4710 0.0022 11 6 5.6162 -2.1915 0.0020 12 7 6.3487 -3.4603 0.0037 13 6 7.6965 -3.4603 0.0033 14 8 8.3043 -2.4076 0.0019 15 6 8.4356 -4.7407 0.0045 16 6 9.8313 -4.7442 0.0046 17 6 10.5151 -5.9425 0.0063 18 6 9.8202 -7.1389 0.0083 19 6 8.4366 -7.1425 0.0078 20 6 7.7407 -5.9511 0.0061 21 1 -0.4850 0.8401 -0.0004 22 1 3.8646 -0.3622 0.0014 23 1 3.8489 -3.0432 -0.8875 24 1 3.8483 -3.0420 0.8924 25 1 5.8795 -1.6192 0.8915 26 1 5.8796 -1.6207 -0.8885 27 1 5.8636 -4.3003 0.0044 28 1 10.3750 -3.8111 -0.0011 29 1 11.5951 -5.9467 0.0059 30 1 10.3601 -8.0743 0.0100 31 1 7.9001 -8.0798 0.0091 32 1 6.6607 -5.9553 0.0062 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138594106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:59 Heat of formation + Delta-G solvation = 2.676412 kcal Electronic energy + Delta-G solvation = -15181.650323 eV Core-core repulsion = 12528.479559 eV Total energy + Delta-G solvation = -2653.170765 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.24856 -38.40454 -35.88965 -34.04632 -31.88331 -31.22325 -31.06465 -28.13995 -24.41069 -23.12596 -22.54299 -21.50689 -20.42016 -18.37039 -17.54762 -16.41854 -15.92051 -15.46786 -15.03846 -14.79936 -14.31719 -14.00744 -13.86129 -13.74929 -13.42292 -12.81069 -12.64500 -11.95116 -11.61266 -11.52886 -11.38350 -10.97065 -10.86174 -10.17403 -9.98329 -9.63771 -9.32196 -9.27714 -9.03302 -8.89282 -7.32257 -5.81528 -3.19094 0.62046 1.07227 2.77332 3.12279 3.37726 3.41460 3.45366 3.67449 4.50862 4.53403 4.56498 4.63965 4.86220 5.07325 5.19640 5.29133 5.42915 5.52431 5.58461 5.63619 5.68237 5.93243 6.03249 6.11374 6.14049 6.33878 6.55741 6.56107 6.61542 7.49076 7.91779 8.18369 8.36505 9.14129 9.86439 10.04713 11.36318 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.058200 B = 0.004150 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.980093 B = 6745.820898 C = 7206.355107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.148 3.852 11 C 0.107 3.893 12 N -0.717 5.717 13 C 0.554 3.446 14 O -0.539 6.539 15 C -0.130 4.130 16 C -0.062 4.062 17 C -0.130 4.130 18 C -0.098 4.098 19 C -0.128 4.128 20 C -0.087 4.087 21 H 0.261 0.739 22 H 0.364 0.636 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.400 0.600 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.608 -15.020 0.012 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.020 3.980 11 C -0.017 4.017 12 N -0.369 5.369 13 C 0.341 3.659 14 O -0.417 6.417 15 C -0.133 4.133 16 C -0.081 4.081 17 C -0.148 4.148 18 C -0.117 4.117 19 C -0.146 4.146 20 C -0.105 4.105 21 H 0.071 0.929 22 H 0.196 0.804 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.236 0.764 28 H 0.154 0.846 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.758 -14.313 0.013 24.398 hybrid contribution 0.213 0.765 0.011 0.795 sum 19.971 -13.547 0.023 24.133 Atomic orbital electron populations 1.69696 1.05128 1.26023 1.57052 1.24671 0.95265 0.97337 1.01608 0.86542 0.79295 0.84742 0.77957 1.20885 1.21559 1.20157 1.19009 0.80202 0.94891 1.43831 0.89079 1.42529 1.04162 1.01832 1.91358 1.20733 0.87586 0.90317 0.99332 1.21638 0.92468 0.84931 1.02637 1.45822 1.05992 1.10368 1.74700 1.18278 0.82157 0.88821 0.76662 1.90775 1.68263 1.32797 1.49914 1.20027 0.94555 0.92980 1.05775 1.21322 0.92839 0.99012 0.94915 1.21175 1.00306 0.92142 1.01135 1.21381 0.94470 0.98293 0.97528 1.21134 0.94441 0.98049 1.00956 1.21390 1.00066 0.91826 0.97242 0.92912 0.80353 0.94849 0.94903 0.91158 0.91135 0.76428 0.84635 0.85363 0.85636 0.85314 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 22.23 27.74 -169.99 -4.71 17.51 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 7 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.94 5.41 -59.91 -0.32 -18.27 16 10 C 0.15 2.76 6.37 -4.05 -0.03 2.74 16 11 C 0.11 1.75 5.79 -4.04 -0.02 1.72 16 12 N -0.72 -9.69 5.51 -61.25 -0.34 -10.03 16 13 C 0.55 8.12 7.77 -12.33 -0.10 8.02 16 14 O -0.54 -9.86 16.35 5.32 0.09 -9.78 16 15 C -0.13 -1.52 5.87 -104.97 -0.62 -2.14 16 16 C -0.06 -0.66 9.60 -39.18 -0.38 -1.04 16 17 C -0.13 -1.06 10.03 -39.64 -0.40 -1.46 16 18 C -0.10 -0.72 10.04 -39.49 -0.40 -1.11 16 19 C -0.13 -0.97 10.03 -39.64 -0.40 -1.37 16 20 C -0.09 -0.79 9.54 -39.19 -0.37 -1.16 16 21 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 22 H 0.36 8.53 5.53 -40.82 -0.23 8.30 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.40 4.24 6.51 -40.82 -0.27 3.97 16 28 H 0.14 1.48 7.65 -52.49 -0.40 1.08 16 29 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 30 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 31 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.13 0.92 6.41 -52.48 -0.34 0.59 16 LS Contribution 279.92 15.07 4.22 4.22 Total: -1.00 -34.04 279.92 -7.03 -41.07 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -3.78 Total: 6.62 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.96 Total: -2.91 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.11 Total: -56.74 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -34.04 -7.03 -41.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138594106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.747 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds