Wall clock time and date at job start Sun Mar 29 2020 21:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00351 * 2 1 4 4 H 1.48501 * 109.47167 * 269.99556 * 3 2 1 5 5 H 1.48504 * 109.46951 * 29.99733 * 3 2 1 6 6 H 1.48501 * 109.47422 * 149.99660 * 3 2 1 7 7 C 1.38817 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99987 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00182 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99914 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46508 * 109.47135 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99852 * 179.97438 * 12 11 10 14 14 O 1.21557 * 120.00061 * 0.02562 * 13 12 11 15 15 C 1.47845 * 119.99555 * 180.02562 * 13 12 11 16 16 C 1.39575 * 120.13807 * 180.02562 * 15 13 12 17 17 C 1.37966 * 119.85100 * 179.97438 * 16 15 13 18 18 C 1.38359 * 120.14194 * 359.97438 * 17 16 15 19 19 C 1.38356 * 120.29572 * 0.04433 * 18 17 16 20 20 C 1.37965 * 120.14354 * 359.95888 * 19 18 17 21 21 H 0.97001 * 119.99913 * 0.02562 * 1 2 3 22 22 H 0.97002 * 120.00019 * 0.02562 * 9 7 2 23 23 H 1.09002 * 109.47170 * 59.99859 * 10 9 7 24 24 H 1.08999 * 109.47764 * 300.00008 * 10 9 7 25 25 H 1.08996 * 109.46951 * 60.00588 * 11 10 9 26 26 H 1.08996 * 109.47668 * 300.00178 * 11 10 9 27 27 H 0.97002 * 119.99932 * 0.02562 * 12 11 10 28 28 H 1.07998 * 120.08057 * 359.70005 * 16 15 13 29 29 H 1.08000 * 119.93085 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.85292 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.93259 * 179.97438 * 19 18 17 32 32 H 1.08003 * 120.07139 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4710 0.0022 11 6 5.6162 -2.1915 0.0020 12 7 6.3487 -3.4603 0.0037 13 6 7.6965 -3.4603 0.0033 14 8 8.3043 -2.4076 0.0019 15 6 8.4356 -4.7407 0.0045 16 6 9.8313 -4.7442 0.0046 17 6 10.5151 -5.9425 0.0063 18 6 9.8202 -7.1389 0.0083 19 6 8.4366 -7.1425 0.0078 20 6 7.7407 -5.9511 0.0061 21 1 -0.4850 0.8401 -0.0004 22 1 3.8646 -0.3622 0.0014 23 1 3.8489 -3.0432 -0.8875 24 1 3.8483 -3.0420 0.8924 25 1 5.8795 -1.6192 0.8915 26 1 5.8796 -1.6207 -0.8885 27 1 5.8636 -4.3003 0.0044 28 1 10.3750 -3.8111 -0.0011 29 1 11.5951 -5.9467 0.0059 30 1 10.3601 -8.0743 0.0100 31 1 7.9001 -8.0798 0.0091 32 1 6.6607 -5.9553 0.0062 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138594106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:59 Heat of formation + Delta-G solvation = -21.774249 kcal Electronic energy + Delta-G solvation = -15182.710584 eV Core-core repulsion = 12528.479559 eV Total energy + Delta-G solvation = -2654.231025 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.23997 -39.26975 -37.48180 -35.64411 -33.59265 -32.27006 -31.85838 -29.68949 -25.81298 -24.34217 -23.47918 -23.00861 -21.47658 -19.93734 -18.98354 -17.43820 -16.86390 -16.74606 -16.48831 -15.83961 -15.68684 -15.36778 -15.33445 -14.81130 -14.59953 -14.23065 -13.61368 -13.45785 -13.18912 -12.73379 -12.67398 -12.57863 -12.10470 -12.00157 -11.83875 -11.14403 -11.05137 -10.32778 -9.94157 -9.87994 -9.38201 -8.06387 -5.41953 -0.14328 0.42617 1.38822 1.40410 1.47618 1.81469 1.99121 2.45946 2.90936 3.25474 3.57197 3.76708 3.88505 4.00094 4.04117 4.15901 4.26552 4.48115 4.50166 4.55187 4.86554 4.95950 5.06002 5.07283 5.26254 5.36884 5.46322 5.51947 5.71149 5.96235 6.16537 6.43316 7.01628 7.09080 7.76087 7.93867 9.14411 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.058200 B = 0.004150 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.980093 B = 6745.820898 C = 7206.355107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.255 1.255 7 C -0.239 4.239 8 H 0.064 0.936 9 N -0.759 5.759 10 C 0.150 3.850 11 C 0.121 3.879 12 N -0.707 5.707 13 C 0.552 3.448 14 O -0.585 6.585 15 C -0.156 4.156 16 C -0.081 4.081 17 C -0.131 4.131 18 C -0.090 4.090 19 C -0.128 4.128 20 C -0.088 4.088 21 H 0.260 0.740 22 H 0.367 0.633 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.416 0.584 28 H 0.121 0.879 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.511 -16.806 0.031 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.179 1.179 7 C -0.370 4.370 8 H 0.082 0.918 9 N -0.405 5.405 10 C 0.024 3.976 11 C -0.003 4.003 12 N -0.359 5.359 13 C 0.341 3.659 14 O -0.466 6.466 15 C -0.159 4.159 16 C -0.100 4.100 17 C -0.148 4.148 18 C -0.108 4.108 19 C -0.145 4.145 20 C -0.107 4.107 21 H 0.069 0.931 22 H 0.200 0.800 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.254 0.746 28 H 0.139 0.861 29 H 0.169 0.831 30 H 0.176 0.824 31 H 0.176 0.824 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 21.693 -16.160 0.033 27.051 hybrid contribution -0.341 1.122 0.001 1.173 sum 21.352 -15.038 0.034 26.117 Atomic orbital electron populations 1.69861 1.07025 1.26870 1.59200 1.25477 0.96112 1.01212 1.02275 0.85456 0.78631 0.79786 0.78225 1.20314 1.21931 1.17931 1.19015 0.82139 0.93851 1.41982 0.91754 1.42550 1.02816 1.03891 1.91287 1.20830 0.88482 0.88342 0.99974 1.21281 0.91049 0.86068 1.01926 1.45640 1.05837 1.10082 1.74352 1.18814 0.82138 0.89528 0.75396 1.90742 1.69090 1.34649 1.52159 1.19882 0.94844 0.92267 1.08877 1.21392 0.92754 0.99723 0.96154 1.21460 1.01569 0.91520 1.00289 1.21832 0.94637 0.99135 0.95194 1.21535 0.94894 0.98499 0.99622 1.21616 1.01011 0.91422 0.96661 0.93131 0.80024 0.93862 0.93969 0.92019 0.91876 0.74608 0.86084 0.83090 0.82389 0.82418 0.83771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.53 13.97 21.65 0.30 -62.23 16 2 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 3 Si 0.95 45.81 27.74 68.60 1.90 47.72 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.25 -11.24 6.52 99.48 0.65 -10.59 16 7 C -0.24 -13.58 10.47 84.03 0.88 -12.70 16 8 H 0.06 3.93 8.06 -2.91 -0.02 3.90 16 9 N -0.76 -35.46 5.41 -343.46 -1.86 -37.32 16 10 C 0.15 5.41 6.37 86.38 0.55 5.96 16 11 C 0.12 3.86 5.79 86.38 0.50 4.36 16 12 N -0.71 -18.40 5.51 -465.96 -2.57 -20.96 16 13 C 0.55 16.13 7.77 86.79 0.67 16.80 16 14 O -0.58 -21.90 16.35 -3.89 -0.06 -21.97 16 15 C -0.16 -3.51 5.87 -20.09 -0.12 -3.63 16 16 C -0.08 -1.69 9.60 22.53 0.22 -1.48 16 17 C -0.13 -1.83 10.03 22.23 0.22 -1.61 16 18 C -0.09 -0.97 10.04 22.33 0.22 -0.74 16 19 C -0.13 -1.48 10.03 22.23 0.22 -1.25 16 20 C -0.09 -1.41 9.54 22.53 0.21 -1.19 16 21 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 22 H 0.37 16.62 5.53 -92.71 -0.51 16.11 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.42 8.07 6.51 -92.71 -0.60 7.46 16 28 H 0.12 2.77 7.65 -2.91 -0.02 2.75 16 29 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 31 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 32 H 0.14 1.69 6.41 -2.91 -0.02 1.67 16 Total: -1.00 -74.47 279.92 1.74 -72.73 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.04 Total: 20.49 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 4.06 Total: 1.53 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -4.12 Total: -120.51 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.06 Total: -21.97 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.72 kcal Total: -74.47 1.74 -72.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138594106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.960 kcal (2) G-P(sol) polarization free energy of solvation -74.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds