Wall clock time and date at job start Sun Mar 29 2020 21:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99647 * 2 1 4 4 H 1.48509 * 109.47396 * 270.00243 * 3 2 1 5 5 H 1.48497 * 109.47419 * 30.00231 * 3 2 1 6 6 H 1.48498 * 109.47396 * 150.00447 * 3 2 1 7 7 C 1.37875 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00237 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00032 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47195 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46923 * 55.00849 * 10 9 7 12 12 N 1.46498 * 109.47431 * 295.00221 * 10 9 7 13 13 C 1.34777 * 119.99940 * 155.28729 * 12 10 9 14 14 N 1.34777 * 119.99827 * 175.40357 * 13 12 10 15 15 O 1.21591 * 120.00005 * 355.12232 * 13 12 10 16 16 C 1.50705 * 109.46989 * 174.99864 * 10 9 7 17 17 C 1.38235 * 119.99862 * 75.14282 * 16 10 9 18 18 C 1.38237 * 120.00200 * 179.78440 * 17 16 10 19 19 C 1.38233 * 119.99759 * 0.44171 * 18 17 16 20 20 C 1.38240 * 120.00060 * 359.81311 * 19 18 17 21 21 C 1.38230 * 119.99723 * 359.97438 * 20 19 18 22 22 H 0.96998 * 120.00502 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46942 * 60.00099 * 9 7 2 24 24 H 1.08998 * 109.47465 * 300.00271 * 9 7 2 25 25 H 0.97003 * 119.99875 * 335.28705 * 12 10 9 26 26 H 0.96997 * 119.99664 * 179.72555 * 14 13 12 27 27 H 0.96997 * 119.99849 * 359.71455 * 14 13 12 28 28 H 1.08000 * 119.99953 * 359.97438 * 17 16 10 29 29 H 1.07996 * 120.00014 * 180.27452 * 18 17 16 30 30 H 1.08001 * 120.00025 * 179.82924 * 19 18 17 31 31 H 1.08001 * 119.99990 * 180.02562 * 20 19 18 32 32 H 1.08007 * 119.99965 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 1 3.5868 -3.1756 -0.8426 12 7 3.6346 -3.2912 1.2510 13 6 3.5135 -4.6326 1.3006 14 7 3.2485 -5.2424 2.4729 15 8 3.6383 -5.2921 0.2867 16 6 5.5235 -2.6381 -0.1254 17 6 6.3075 -2.2982 0.9612 18 6 7.6852 -2.3040 0.8484 19 6 8.2788 -2.6410 -0.3537 20 6 7.4947 -2.9758 -1.4418 21 6 6.1172 -2.9742 -1.3277 22 1 -0.4851 0.8400 0.0004 23 1 3.8752 -0.6803 0.8889 24 1 3.8746 -0.6799 -0.8911 25 1 3.4654 -2.7593 2.0444 26 1 3.1574 -6.2075 2.5078 27 1 3.1490 -4.7163 3.2816 28 1 5.8436 -2.0310 1.8992 29 1 8.2977 -2.0427 1.6986 30 1 9.3551 -2.6429 -0.4426 31 1 7.9585 -3.2395 -2.3809 32 1 5.5045 -3.2362 -2.1778 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158971235.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:38 Heat of formation + Delta-G solvation = -41.320205 kcal Electronic energy + Delta-G solvation = -16202.735458 eV Core-core repulsion = 13547.656857 eV Total energy + Delta-G solvation = -2655.078601 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10485 -39.77937 -36.82204 -34.80536 -34.44701 -32.07778 -31.65711 -30.93390 -26.69480 -23.62238 -23.25699 -22.51475 -21.23904 -19.17245 -19.02186 -18.23406 -17.44941 -16.44264 -16.34040 -16.08839 -15.64802 -15.27083 -15.00878 -14.59158 -14.27761 -14.14072 -13.77257 -13.49986 -13.02964 -12.51736 -12.40898 -11.92274 -11.72685 -11.70260 -11.40647 -11.35162 -10.76770 -10.64587 -9.87582 -9.73504 -9.53076 -8.26726 -6.31635 0.50900 0.57702 1.39068 1.39989 1.51219 2.12551 2.28921 2.37133 2.97931 3.08682 3.76071 3.98072 4.04812 4.22862 4.34608 4.40182 4.62352 4.75385 4.78305 5.04599 5.16857 5.20802 5.29420 5.56827 5.62509 5.66311 5.67587 5.84422 6.06842 6.10742 6.19908 6.28703 6.75730 7.21631 7.32768 7.76569 8.89717 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.009524 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.277319 B = 2939.117971 C = 3922.472985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.239 1.239 7 C -0.519 4.519 8 H 0.030 0.970 9 C -0.004 4.004 10 C 0.220 3.780 11 H 0.052 0.948 12 N -0.713 5.713 13 C 0.699 3.301 14 N -0.848 5.848 15 O -0.650 6.650 16 C -0.102 4.102 17 C -0.117 4.117 18 C -0.124 4.124 19 C -0.127 4.127 20 C -0.125 4.125 21 C -0.131 4.131 22 H 0.266 0.734 23 H 0.040 0.960 24 H 0.029 0.971 25 H 0.407 0.593 26 H 0.419 0.581 27 H 0.412 0.588 28 H 0.126 0.874 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.142 0.858 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.926 -3.685 5.999 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.162 1.162 7 C -0.557 4.557 8 H 0.048 0.952 9 C -0.042 4.042 10 C 0.114 3.886 11 H 0.070 0.930 12 N -0.367 5.367 13 C 0.397 3.603 14 N -0.417 5.417 15 O -0.533 6.533 16 C -0.103 4.103 17 C -0.136 4.136 18 C -0.142 4.142 19 C -0.145 4.145 20 C -0.142 4.142 21 C -0.150 4.150 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.243 0.757 26 H 0.252 0.748 27 H 0.243 0.757 28 H 0.144 0.856 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.907 -3.967 5.099 17.168 hybrid contribution -0.842 0.656 0.410 1.143 sum 15.065 -3.311 5.509 16.379 Atomic orbital electron populations 1.70069 1.08348 1.28075 1.52479 1.25929 0.95477 1.03208 0.94145 0.85715 0.79776 0.78462 0.79009 1.19907 1.21124 1.16243 1.21215 0.91161 0.92925 1.50443 0.95194 1.19733 0.94481 0.91919 0.98035 1.19410 0.89243 0.93931 0.86024 0.92955 1.44857 1.73041 1.04594 1.14175 1.16233 0.77291 0.82488 0.84323 1.42678 1.78711 1.11900 1.08393 1.90872 1.61204 1.65616 1.35594 1.20436 0.95481 0.99320 0.95095 1.21107 0.94417 0.99844 0.98204 1.21452 0.94140 0.99705 0.98888 1.21484 1.01027 0.99268 0.92722 1.21381 0.92728 0.99931 1.00198 1.21203 0.96141 1.00429 0.97235 0.92556 0.94180 0.95241 0.75749 0.74809 0.75725 0.85569 0.83436 0.83194 0.84014 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 2 C 0.01 0.54 5.47 84.65 0.46 1.00 16 3 Si 0.95 42.70 27.47 68.60 1.88 44.58 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 7 C -0.52 -28.94 9.39 25.60 0.24 -28.70 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 9 C 0.00 -0.18 3.51 29.85 0.10 -0.07 16 10 C 0.22 9.11 2.15 44.25 0.10 9.20 16 11 H 0.05 2.55 7.33 -2.39 -0.02 2.53 16 12 N -0.71 -26.11 4.23 -461.40 -1.95 -28.06 16 13 C 0.70 25.99 8.79 179.05 1.57 27.57 16 14 N -0.85 -21.07 8.88 -184.74 -1.64 -22.71 16 15 O -0.65 -30.38 16.82 -4.00 -0.07 -30.45 16 16 C -0.10 -3.63 4.90 -19.86 -0.10 -3.73 16 17 C -0.12 -3.49 9.29 22.27 0.21 -3.29 16 18 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 19 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 20 C -0.12 -3.30 10.05 22.27 0.22 -3.08 16 21 C -0.13 -4.42 9.67 22.27 0.22 -4.21 16 22 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 23 H 0.04 1.68 7.20 -2.38 -0.02 1.66 16 24 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 25 H 0.41 12.98 8.62 -92.71 -0.80 12.18 16 26 H 0.42 8.95 8.93 -92.71 -0.83 8.13 16 27 H 0.41 7.39 8.85 -92.71 -0.82 6.57 16 28 H 0.13 3.39 7.87 -2.91 -0.02 3.37 16 29 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 32 H 0.11 3.81 8.00 -2.91 -0.02 3.79 16 Total: -1.00 -75.03 280.25 0.65 -74.38 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: -1.35 Total: 31.24 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 3.47 Total: -10.77 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -3.29 Total: -108.99 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.07 Total: -30.45 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Total: -75.03 0.65 -74.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158971235.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.061 kcal (2) G-P(sol) polarization free energy of solvation -75.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds