Wall clock time and date at job start Sun Mar 29 2020 21:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39793 * 120.06806 * 65.00696 * 3 2 1 5 5 C 1.37696 * 119.95733 * 179.68301 * 4 3 2 6 6 C 1.39098 * 120.10529 * 0.56085 * 5 4 3 7 7 N 1.39342 * 119.93155 * 179.72423 * 6 5 4 8 8 C 1.46496 * 119.99776 * 359.73477 * 7 6 5 9 9 C 1.53006 * 109.46995 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47184 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00192 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47309 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47510 * 119.99847 * 14 12 10 17 17 H 1.48506 * 109.47246 * 239.99882 * 14 12 10 18 18 C 1.39336 * 120.14018 * 359.46079 * 6 5 4 19 19 F 1.35098 * 119.98583 * 180.26859 * 18 6 5 20 20 C 1.37836 * 120.03889 * 0.24308 * 18 6 5 21 21 H 1.07994 * 120.02176 * 359.97438 * 4 3 2 22 22 H 1.07999 * 119.94641 * 180.31947 * 5 4 3 23 23 H 0.96998 * 120.00032 * 179.73552 * 7 6 5 24 24 H 1.09001 * 109.47464 * 60.00241 * 8 7 6 25 25 H 1.09001 * 109.47459 * 299.99956 * 8 7 6 26 26 H 1.09001 * 109.47002 * 299.99701 * 9 8 7 27 27 H 1.08993 * 109.46955 * 60.00138 * 9 8 7 28 28 H 0.96996 * 120.00505 * 179.97438 * 13 12 10 29 29 H 1.07991 * 120.05639 * 180.02562 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2686 -0.5102 -1.0965 5 6 4.6455 -0.5025 -1.0969 6 6 5.3407 0.0022 -0.0029 7 7 6.7341 0.0029 -0.0047 8 6 7.4653 -0.5327 -1.1556 9 6 8.9699 -0.4132 -0.9044 10 6 9.7222 -0.9636 -2.0885 11 1 9.1812 -1.3595 -2.9353 12 6 11.1009 -0.9628 -2.0904 13 7 11.7596 -0.4811 -1.0590 14 14 12.0333 -1.6457 -3.5578 15 1 11.0673 -2.1238 -4.5794 16 1 12.8856 -0.5796 -4.1427 17 1 12.8884 -2.7774 -3.1180 18 6 4.6467 0.5120 1.0925 19 9 5.3250 1.0063 2.1511 20 6 3.2683 0.5127 1.0965 21 1 2.7302 -0.9063 -1.9448 22 1 5.1866 -0.8925 -1.9463 23 1 7.2199 0.3581 0.7560 24 1 7.2006 0.0323 -2.0493 25 1 7.2024 -1.5810 -1.2973 26 1 9.2325 0.6352 -0.7631 27 1 9.2350 -0.9779 -0.0106 28 1 12.7295 -0.4809 -1.0601 29 1 2.7301 0.9081 1.9452 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168312670.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:17 Heat of formation + Delta-G solvation = -4.327321 kcal Electronic energy + Delta-G solvation = -14861.045382 eV Core-core repulsion = 12084.110607 eV Total energy + Delta-G solvation = -2776.934774 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.74365 -39.43478 -36.87952 -35.56939 -33.24864 -30.86391 -30.76891 -28.46339 -25.10849 -23.07067 -22.76248 -20.88642 -19.11110 -17.50926 -16.76778 -16.15873 -15.95421 -15.64331 -14.63635 -14.25439 -14.22981 -13.92730 -13.85601 -13.82983 -13.35459 -12.54564 -12.41559 -12.25089 -12.05222 -11.54087 -11.20449 -11.11267 -10.72584 -10.70680 -9.79217 -9.76170 -9.41057 -9.00138 -8.54904 -7.33778 -6.19685 -4.24148 0.87092 1.15684 2.66033 2.92047 3.21015 3.28958 3.31774 3.54544 3.80399 3.87503 4.30995 4.33063 4.70202 4.90669 5.17597 5.20770 5.47009 5.73836 5.85006 5.99414 6.04229 6.12100 6.23675 6.48829 6.61475 7.18493 7.45957 7.46435 7.50499 7.74973 7.80417 8.15046 8.81647 9.41629 10.91768 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.047428 B = 0.004457 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.230426 B = 6280.089277 C = 6849.872599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.271 3.729 3 C -0.095 4.095 4 C -0.019 4.019 5 C -0.186 4.186 6 C 0.235 3.765 7 N -0.717 5.717 8 C 0.117 3.883 9 C 0.011 3.989 10 C -0.525 4.525 11 H 0.060 0.940 12 C 0.059 3.941 13 N -0.891 5.891 14 Si 0.898 3.102 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.002 3.998 19 F -0.139 7.139 20 C -0.051 4.051 21 H 0.134 0.866 22 H 0.144 0.856 23 H 0.406 0.594 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.193 0.850 1.858 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.043 4.043 3 C -0.102 4.102 4 C -0.041 4.041 5 C -0.210 4.210 6 C 0.121 3.879 7 N -0.339 5.339 8 C -0.005 4.005 9 C -0.026 4.026 10 C -0.564 4.564 11 H 0.079 0.921 12 C -0.143 4.143 13 N -0.529 5.529 14 Si 0.725 3.275 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.022 4.022 19 F -0.118 7.118 20 C -0.073 4.073 21 H 0.152 0.848 22 H 0.162 0.838 23 H 0.242 0.758 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.555 0.813 1.776 13.695 hybrid contribution 1.459 -0.094 -0.196 1.475 sum -12.096 0.719 1.581 12.220 Atomic orbital electron populations 1.81231 1.12151 1.10379 1.08188 1.25583 0.92443 0.92907 0.93331 1.15356 0.84146 1.12676 0.98016 1.20904 0.93344 0.93908 0.95948 1.20535 0.93522 1.07862 0.99049 1.18267 0.85452 0.91716 0.92459 1.45428 1.01655 1.64105 1.22687 1.21936 0.95121 0.97252 0.86165 1.19313 0.86859 0.98192 0.98256 1.21020 0.91287 1.41279 1.02785 0.92148 1.25012 0.97835 0.95161 0.96296 1.69958 1.07786 1.45468 1.29719 0.86446 0.79861 0.78740 0.82430 1.19581 1.20883 1.20888 1.16806 0.89477 1.09310 0.86613 1.91469 1.79902 1.86130 1.54338 1.20732 0.91620 0.97089 0.97838 0.84767 0.83828 0.75837 0.92322 0.92318 0.95784 0.95786 0.92746 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.17 18.54 41.84 0.78 -5.40 15 2 C 0.27 3.22 15.33 -22.48 -0.34 2.88 15 3 C -0.10 -1.01 5.74 -106.80 -0.61 -1.63 15 4 C -0.02 -0.19 9.74 -39.20 -0.38 -0.58 15 5 C -0.19 -2.15 9.28 -39.46 -0.37 -2.51 15 6 C 0.23 3.13 6.66 -83.72 -0.56 2.57 15 7 N -0.72 -10.98 5.72 -58.56 -0.33 -11.32 15 8 C 0.12 2.06 4.84 -4.04 -0.02 2.04 15 9 C 0.01 0.26 5.09 -27.88 -0.14 0.11 15 10 C -0.53 -13.52 9.11 -34.44 -0.31 -13.83 15 11 H 0.06 1.49 7.74 -52.48 -0.41 1.08 15 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 13 N -0.89 -25.17 13.29 55.43 0.74 -24.43 15 14 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 15 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 18 C 0.00 0.03 7.30 -39.32 -0.29 -0.26 15 19 F -0.14 -1.90 16.62 2.25 0.04 -1.86 15 20 C -0.05 -0.55 9.72 -39.13 -0.38 -0.93 15 21 H 0.13 1.03 8.06 -52.49 -0.42 0.61 15 22 H 0.14 1.58 6.70 -52.49 -0.35 1.23 15 23 H 0.41 6.24 7.94 -40.82 -0.32 5.92 15 24 H 0.06 1.00 7.93 -51.93 -0.41 0.58 15 25 H 0.06 1.00 7.95 -51.93 -0.41 0.58 15 26 H 0.02 0.59 8.14 -51.93 -0.42 0.16 15 27 H 0.02 0.59 8.14 -51.93 -0.42 0.16 15 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 29 H 0.14 1.24 8.06 -52.49 -0.42 0.81 15 LS Contribution 272.25 15.07 4.10 4.10 Total: -1.00 -28.03 272.25 -5.94 -33.96 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -2.73 Total: 0.28 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -3.50 Total: -10.64 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 1.18 Total: -41.15 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.03 -5.94 -33.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168312670.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.637 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds