Wall clock time and date at job start Sun Mar 29 2020 22:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50709 * 109.46718 * 2 1 4 4 C 1.38278 * 119.93114 * 269.72477 * 3 2 1 5 5 C 1.38116 * 120.07184 * 179.76335 * 4 3 2 6 6 C 1.38878 * 119.92340 * 0.51341 * 5 4 3 7 7 N 1.39905 * 120.06686 * 179.72271 * 6 5 4 8 8 C 1.34779 * 119.99569 * 213.30380 * 7 6 5 9 9 O 1.21581 * 120.00408 * 5.30702 * 8 7 6 10 10 N 1.34784 * 119.99406 * 185.31806 * 8 7 6 11 11 C 1.37170 * 119.99585 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99937 * 359.97438 * 11 10 8 13 13 C 1.38876 * 119.99817 * 179.97438 * 11 10 8 14 14 N 1.31477 * 120.00102 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 120.00109 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46730 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46645 * 119.99847 * 15 13 11 18 18 H 1.48495 * 109.47088 * 240.00094 * 15 13 11 19 19 C 1.38881 * 119.85933 * 359.74404 * 6 5 4 20 20 C 1.38103 * 119.92996 * 359.97438 * 19 6 5 21 21 H 1.08995 * 109.47296 * 59.99929 * 1 2 3 22 22 H 1.08994 * 109.47316 * 299.99558 * 1 2 3 23 23 H 1.09010 * 109.46673 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47763 * 119.99818 * 2 1 3 25 25 H 1.08994 * 109.47316 * 240.00441 * 2 1 3 26 26 H 1.08003 * 119.96414 * 0.02562 * 4 3 2 27 27 H 1.07995 * 120.03704 * 180.25388 * 5 4 3 28 28 H 0.96997 * 120.00146 * 33.29525 * 7 6 5 29 29 H 0.96998 * 120.00308 * 359.97438 * 10 8 7 30 30 H 0.97003 * 120.00036 * 179.97438 * 14 13 11 31 31 H 1.08004 * 120.03101 * 179.97438 * 19 6 5 32 32 H 1.08001 * 119.96490 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2676 2.0695 -1.1983 5 6 2.7233 3.3734 -1.2018 6 6 2.9552 4.0293 0.0002 7 7 3.4223 5.3481 0.0002 8 6 4.2511 5.7694 0.9760 9 8 4.6697 4.9803 1.8008 10 7 4.6156 7.0655 1.0375 11 6 5.4587 7.4944 2.0309 12 1 5.8300 6.7935 2.7640 13 6 5.8348 8.8297 2.0939 14 7 5.3832 9.6828 1.2012 15 14 6.9824 9.4140 3.4472 16 1 7.3457 8.2670 4.3175 17 1 8.2124 9.9841 2.8412 18 1 6.3017 10.4553 4.2582 19 6 2.7229 3.3733 1.2020 20 6 2.2617 2.0715 1.1985 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 2.0909 1.5574 -2.1327 27 1 2.9030 3.8807 -2.1380 28 1 3.1498 5.9592 -0.7021 29 1 4.2819 7.6950 0.3793 30 1 5.6456 10.6156 1.2455 31 1 2.9027 3.8806 2.1383 32 1 2.0813 1.5607 2.1328 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264211.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:48 Heat of formation + Delta-G solvation = -35.045304 kcal Electronic energy + Delta-G solvation = -15570.394514 eV Core-core repulsion = 12915.588013 eV Total energy + Delta-G solvation = -2654.806501 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.38297 -39.71865 -36.56275 -35.75683 -33.95488 -33.02554 -31.77859 -29.32557 -26.89447 -24.50442 -23.81387 -22.21737 -21.36008 -20.05471 -19.26327 -18.03382 -16.78978 -16.47428 -16.34948 -15.67661 -15.58989 -15.03941 -14.80588 -14.53547 -14.20180 -14.01509 -13.55311 -13.38502 -12.98420 -12.82324 -12.42780 -12.18802 -12.10477 -11.84658 -11.63447 -11.62706 -11.11402 -10.80589 -10.08515 -9.77775 -8.81356 -8.46132 -5.95132 0.45236 0.55892 1.40042 1.41888 1.56124 2.03452 2.25168 2.45403 2.93953 3.26482 3.83864 3.99977 4.02832 4.18386 4.37490 4.56127 4.62681 4.70217 4.74696 4.90235 5.14561 5.16332 5.21044 5.36942 5.44245 5.47236 5.51497 5.75891 5.79893 5.80982 6.24417 6.38114 6.75786 7.09854 7.60741 8.08515 8.73015 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.067324 B = 0.004648 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.796687 B = 6022.180187 C = 6290.134981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.111 4.111 4 C -0.094 4.094 5 C -0.153 4.153 6 C 0.153 3.847 7 N -0.684 5.684 8 C 0.649 3.351 9 O -0.647 6.647 10 N -0.585 5.585 11 C -0.321 4.321 12 H 0.081 0.919 13 C -0.016 4.016 14 N -0.927 5.927 15 Si 0.998 3.002 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.150 4.150 20 C -0.105 4.105 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.156 0.844 27 H 0.145 0.855 28 H 0.413 0.587 29 H 0.396 0.604 30 H 0.277 0.723 31 H 0.099 0.901 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.982 -13.521 -6.528 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.113 4.113 4 C -0.112 4.112 5 C -0.174 4.174 6 C 0.058 3.942 7 N -0.332 5.332 8 C 0.350 3.650 9 O -0.532 6.532 10 N -0.225 5.225 11 C -0.450 4.450 12 H 0.099 0.901 13 C -0.215 4.215 14 N -0.568 5.568 15 Si 0.821 3.179 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.171 4.171 20 C -0.123 4.123 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.174 0.826 27 H 0.163 0.837 28 H 0.250 0.750 29 H 0.231 0.769 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.541 -13.881 -5.793 17.297 hybrid contribution 0.430 1.451 0.208 1.528 sum -8.111 -12.430 -5.585 15.858 Atomic orbital electron populations 1.21740 0.94186 1.02338 1.01858 1.20522 0.96520 0.90808 1.03585 1.20145 1.00876 0.97790 0.92444 1.21125 0.98122 0.93264 0.98690 1.21101 1.04493 0.95893 0.95933 1.17877 0.97144 0.84327 0.94889 1.42432 1.49839 1.11712 1.29260 1.16090 0.82102 0.83431 0.83409 1.90717 1.62837 1.54867 1.44769 1.40975 1.46120 1.05447 1.29973 1.19610 1.24116 0.94101 1.07198 0.90085 1.26018 0.99752 0.95056 1.00666 1.69712 1.46046 1.04593 1.36441 0.84801 0.77637 0.78023 0.77433 1.19749 1.19609 1.19615 1.21152 1.01651 0.97010 0.97271 1.21031 0.98970 0.93288 0.99028 0.92467 0.93534 0.90970 0.90933 0.89569 0.82642 0.83739 0.74986 0.76948 0.91410 0.88325 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.89 71.98 0.71 -1.43 16 2 C -0.08 -1.31 6.06 29.85 0.18 -1.13 16 3 C -0.11 -2.72 5.14 -19.84 -0.10 -2.82 16 4 C -0.09 -2.18 9.69 22.25 0.22 -1.96 16 5 C -0.15 -4.26 9.96 22.39 0.22 -4.03 16 6 C 0.15 5.61 6.28 38.16 0.24 5.85 16 7 N -0.68 -26.95 5.35 -317.19 -1.70 -28.65 16 8 C 0.65 32.90 8.25 179.05 1.48 34.38 16 9 O -0.65 -37.60 13.60 -3.97 -0.05 -37.65 16 10 N -0.58 -30.96 5.29 -320.71 -1.70 -32.65 16 11 C -0.32 -18.55 9.68 84.01 0.81 -17.74 16 12 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 13 C -0.02 -0.87 5.50 84.90 0.47 -0.40 16 14 N -0.93 -50.67 13.05 21.65 0.28 -50.39 16 15 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 C -0.15 -5.80 8.65 22.39 0.19 -5.60 16 20 C -0.10 -3.18 9.69 22.25 0.22 -2.96 16 21 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 25 H 0.09 1.18 8.08 -2.39 -0.02 1.16 16 26 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 27 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.41 13.30 8.83 -92.71 -0.82 12.48 16 29 H 0.40 19.80 7.92 -92.71 -0.73 19.07 16 30 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.10 4.54 6.41 -2.91 -0.02 4.52 16 32 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -69.05 280.37 3.09 -65.96 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -0.41 Total: 35.68 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 4.64 Total: 2.15 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -3.11 Total: -111.69 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.05 Total: -37.65 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -69.05 3.09 -65.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264211.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.914 kcal (2) G-P(sol) polarization free energy of solvation -69.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds