Wall clock time and date at job start Sun Mar 29 2020 22:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38169 * 119.55121 * 2 1 4 4 C 1.39806 * 118.99796 * 180.02562 * 3 2 1 5 5 C 1.48150 * 120.91868 * 179.97438 * 4 3 2 6 6 O 1.21513 * 120.00365 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99679 * 179.71906 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27153 * 7 5 4 9 9 H 1.09001 * 109.46948 * 35.00281 * 8 7 5 10 10 C 1.52997 * 109.47288 * 275.00460 * 8 7 5 11 11 C 1.50700 * 109.47343 * 155.00212 * 8 7 5 12 12 H 1.08005 * 119.99818 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99973 * 180.02562 * 11 8 7 14 14 N 1.31512 * 120.00332 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99775 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47314 * 90.00103 * 15 13 11 17 17 H 1.48500 * 109.46890 * 210.00106 * 15 13 11 18 18 H 1.48499 * 109.47173 * 329.99839 * 15 13 11 19 19 C 1.39838 * 118.15364 * 0.24738 * 4 3 2 20 20 C 1.38125 * 119.00052 * 359.48033 * 19 4 3 21 21 N 1.31803 * 119.55024 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.46518 * 90.00352 * 1 2 3 23 23 H 1.08999 * 109.46759 * 209.99842 * 1 2 3 24 24 H 1.08996 * 109.47092 * 330.00224 * 1 2 3 25 25 H 1.07998 * 120.50437 * 359.97387 * 3 2 1 26 26 H 0.97001 * 119.99727 * 0.28050 * 7 5 4 27 27 H 1.08998 * 109.47338 * 179.97438 * 10 8 7 28 28 H 1.09001 * 109.46979 * 299.99801 * 10 8 7 29 29 H 1.09000 * 109.47470 * 59.99597 * 10 8 7 30 30 H 0.96993 * 120.00188 * 180.02562 * 14 13 11 31 31 H 1.07996 * 120.49446 * 179.73251 * 19 4 3 32 32 H 1.08005 * 119.54467 * 180.27181 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5865 1.1885 -0.0005 5 6 4.3600 2.4520 -0.0011 6 8 3.7797 3.5197 -0.0016 7 7 5.7073 2.4173 0.0041 8 6 6.4722 3.6667 0.0095 9 1 5.9417 4.4150 0.5984 10 6 6.6368 4.1702 -1.4258 11 6 7.8304 3.4217 0.6147 12 1 8.0973 2.4338 0.9604 13 6 8.7322 4.4585 0.7272 14 7 8.4071 5.6614 0.3068 15 14 10.4160 4.1544 1.4768 16 1 11.3715 3.7684 0.4076 17 1 10.8924 5.3934 2.1427 18 1 10.3227 3.0599 2.4761 19 6 4.2344 -0.0508 -0.0064 20 6 3.4741 -1.2039 -0.0004 21 7 2.1571 -1.1466 0.0005 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6494 2.1378 -0.0004 26 1 6.1704 1.5651 0.0041 27 1 7.2055 5.1001 -1.4218 28 1 7.1673 3.4220 -2.0147 29 1 5.6545 4.3475 -1.8637 30 1 9.0417 6.3907 0.3856 31 1 5.3129 -0.1053 -0.0114 32 1 3.9654 -2.1658 -0.0004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235428973.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:52 Heat of formation + Delta-G solvation = -33.253528 kcal Electronic energy + Delta-G solvation = -15766.877679 eV Core-core repulsion = 13112.148876 eV Total energy + Delta-G solvation = -2654.728804 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.62177 -40.10914 -36.83925 -34.74083 -33.85396 -33.36958 -30.81961 -28.55858 -27.38355 -25.72312 -23.80280 -22.75849 -21.21255 -19.40570 -18.01426 -17.66540 -16.82444 -16.62198 -16.35437 -16.11229 -15.54966 -15.22164 -14.81656 -14.51270 -14.20185 -13.75892 -13.31436 -13.10818 -13.02012 -12.90465 -12.75656 -12.65837 -12.32399 -12.15948 -11.25729 -11.15419 -10.94328 -10.63658 -10.50816 -9.96801 -9.87940 -8.19765 -6.37914 -0.32236 0.07014 1.45561 1.46340 1.56888 1.89329 2.22962 2.47025 2.82203 3.11216 3.34230 3.62525 3.76518 3.97161 4.03091 4.42677 4.59508 4.70383 4.74067 4.80123 4.87361 4.97876 5.03119 5.09056 5.17904 5.36541 5.52114 5.61378 5.65499 5.83694 6.04255 6.67480 6.78961 6.89650 7.23936 7.39399 8.86845 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.045924 B = 0.005415 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.556789 B = 5169.168327 C = 5563.887960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.119 3.881 3 C -0.133 4.133 4 C -0.093 4.093 5 C 0.538 3.462 6 O -0.589 6.589 7 N -0.691 5.691 8 C 0.268 3.732 9 H 0.001 0.999 10 C -0.134 4.134 11 C -0.549 4.549 12 H 0.076 0.924 13 C 0.016 3.984 14 N -0.917 5.917 15 Si 0.975 3.025 16 H -0.270 1.270 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.146 4.146 20 C 0.106 3.894 21 N -0.487 5.487 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.139 0.861 26 H 0.406 0.594 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.011 0.989 30 H 0.266 0.734 31 H 0.161 0.839 32 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 -14.002 -0.907 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.018 4.018 3 C -0.154 4.154 4 C -0.104 4.104 5 C 0.325 3.675 6 O -0.471 6.471 7 N -0.340 5.340 8 C 0.165 3.835 9 H 0.019 0.981 10 C -0.193 4.193 11 C -0.587 4.587 12 H 0.094 0.906 13 C -0.185 4.185 14 N -0.555 5.555 15 Si 0.799 3.201 16 H -0.195 1.195 17 H -0.213 1.213 18 H -0.187 1.187 19 C -0.166 4.166 20 C -0.051 4.051 21 N -0.198 5.198 22 H 0.110 0.890 23 H 0.105 0.895 24 H 0.106 0.894 25 H 0.157 0.843 26 H 0.243 0.757 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.178 0.822 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -9.333 -13.808 -0.918 16.691 hybrid contribution 1.619 1.062 0.272 1.955 sum -7.714 -12.745 -0.646 14.912 Atomic orbital electron populations 1.20810 0.86064 1.04570 1.04319 1.21717 0.98775 0.87054 0.94293 1.22208 0.93181 1.00655 0.99312 1.20481 0.94949 0.93401 1.01590 1.18795 0.83068 0.88869 0.76733 1.90697 1.70804 1.32888 1.52751 1.46216 1.05094 1.11461 1.71196 1.18461 0.90017 0.81387 0.93600 0.98070 1.21910 0.97906 1.02296 0.97212 1.21510 0.98519 0.96992 1.41650 0.90593 1.25807 1.02782 0.94479 0.95400 1.70045 1.37175 1.01500 1.46800 0.85300 0.78492 0.77669 0.78612 1.19532 1.21298 1.18740 1.22621 1.02943 0.91695 0.99345 1.23298 0.88741 0.99385 0.93678 1.67503 1.11081 1.29363 1.11807 0.88998 0.89473 0.89425 0.84288 0.75704 0.91193 0.93822 0.96952 0.92450 0.82170 0.78358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 10.17 71.24 0.72 -0.96 16 2 C 0.12 2.90 6.78 42.55 0.29 3.19 16 3 C -0.13 -3.89 9.31 22.63 0.21 -3.68 16 4 C -0.09 -3.00 5.91 -19.88 -0.12 -3.12 16 5 C 0.54 22.56 7.76 86.88 0.67 23.24 16 6 O -0.59 -29.77 16.11 -3.76 -0.06 -29.83 16 7 N -0.69 -28.95 5.03 -448.70 -2.26 -31.21 16 8 C 0.27 13.92 2.56 44.24 0.11 14.04 16 9 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 10 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 11 C -0.55 -28.61 8.73 25.60 0.22 -28.39 16 12 H 0.08 3.66 7.74 -2.91 -0.02 3.63 16 13 C 0.02 0.83 5.30 84.65 0.45 1.28 16 14 N -0.92 -52.10 11.32 21.45 0.24 -51.86 16 15 Si 0.97 41.24 29.54 68.60 2.03 43.26 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 17 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 C -0.15 -3.54 9.62 22.63 0.22 -3.33 16 20 C 0.11 2.21 11.17 84.67 0.95 3.15 16 21 N -0.49 -11.77 10.25 -184.04 -1.89 -13.65 16 22 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 25 H 0.14 4.15 7.74 -2.91 -0.02 4.13 16 26 H 0.41 13.96 6.68 -92.71 -0.62 13.34 16 27 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 28 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.16 3.15 6.54 -2.91 -0.02 3.13 16 32 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -68.14 279.49 2.98 -65.16 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.51 Total: 18.85 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 4.40 Total: -0.73 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -3.90 Total: -96.72 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.06 Total: -29.83 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -68.14 2.98 -65.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235428973.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.910 kcal (2) G-P(sol) polarization free energy of solvation -68.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds