Wall clock time and date at job start Sun Mar 29 2020 22:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.40474 * 120.84429 * 2 1 4 4 N 1.30409 * 120.46482 * 180.24946 * 3 2 1 5 5 N 1.28381 * 122.45115 * 0.03980 * 4 3 2 6 6 C 1.46503 * 119.16939 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46840 * 268.10540 * 6 5 4 8 8 C 1.50694 * 115.54792 * 271.38538 * 7 6 5 9 9 H 1.08008 * 120.00159 * 117.23119 * 8 7 6 10 10 C 1.37881 * 120.00089 * 297.23059 * 8 7 6 11 11 N 1.31512 * 119.99982 * 356.22553 * 10 8 7 12 12 Si 1.86808 * 119.99857 * 176.22466 * 10 8 7 13 13 H 1.48493 * 109.47201 * 89.99960 * 12 10 8 14 14 H 1.48498 * 109.47082 * 210.00284 * 12 10 8 15 15 H 1.48500 * 109.47057 * 330.00022 * 12 10 8 16 16 C 1.52997 * 117.49571 * 125.68633 * 7 6 5 17 17 C 1.52997 * 117.49976 * 57.06053 * 7 6 5 18 18 C 1.34671 * 121.66070 * 359.95946 * 5 4 3 19 19 O 1.22064 * 120.34718 * 180.02562 * 18 5 4 20 20 C 1.36609 * 120.84169 * 180.27098 * 2 1 3 21 21 H 1.09003 * 109.47728 * 269.72235 * 1 2 3 22 22 H 1.09003 * 109.46804 * 29.72897 * 1 2 3 23 23 H 1.09001 * 109.47074 * 149.72241 * 1 2 3 24 24 H 1.07997 * 119.76452 * 0.24463 * 3 2 1 25 25 H 1.08999 * 109.46885 * 28.10598 * 6 5 4 26 26 H 1.08997 * 109.47448 * 148.10235 * 6 5 4 27 27 H 0.96999 * 119.99522 * 185.03188 * 11 10 8 28 28 H 1.08997 * 117.50671 * 359.97438 * 16 7 6 29 29 H 1.09006 * 117.49997 * 145.02344 * 16 7 6 30 30 H 1.09001 * 117.49522 * 214.98045 * 17 7 6 31 31 H 1.08999 * 117.49872 * 359.97438 * 17 7 6 32 32 H 1.08002 * 121.09313 * 359.75616 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2271 1.2061 0.0000 4 7 3.5312 1.1974 -0.0049 5 7 4.2129 0.1096 -0.0106 6 6 5.6760 0.1837 -0.0164 7 6 6.1818 0.1658 -1.4604 8 6 6.4346 -1.2005 -2.0435 9 1 5.8631 -1.5383 -2.8955 10 6 7.3955 -2.0196 -1.4894 11 7 8.1423 -1.5809 -0.4998 12 14 7.6365 -3.7524 -2.1445 13 1 8.6396 -3.7326 -3.2392 14 1 8.1160 -4.6333 -1.0495 15 1 6.3452 -4.2686 -2.6656 16 6 7.1054 1.3037 -1.8994 17 6 5.6621 1.2518 -2.4045 18 6 3.6169 -1.0981 -0.0111 19 8 4.2885 -2.1173 -0.0162 20 6 2.2073 -1.1729 -0.0055 21 1 -0.3635 -0.0050 1.0276 22 1 -0.3633 0.8924 -0.5096 23 1 -0.3633 -0.8875 -0.5181 24 1 1.6971 2.1470 0.0040 25 1 5.9949 1.1061 0.4689 26 1 6.0853 -0.6706 0.5226 27 1 8.8662 -2.1291 -0.1587 28 1 7.3525 2.0654 -1.1599 29 1 7.8963 1.0642 -2.6104 30 1 5.5033 0.9780 -3.4475 31 1 4.9595 1.9788 -1.9971 32 1 1.6992 -2.1259 -0.0061 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235934093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:42 Heat of formation + Delta-G solvation = 52.373982 kcal Electronic energy + Delta-G solvation = -16719.142680 eV Core-core repulsion = 14068.126963 eV Total energy + Delta-G solvation = -2651.015716 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.31688 -36.99877 -36.73059 -34.72306 -31.94343 -30.97583 -28.85921 -26.33379 -25.16877 -24.04199 -21.78160 -21.17219 -19.34069 -17.82280 -16.99337 -16.16681 -15.40945 -15.31121 -14.54068 -14.01401 -13.70795 -13.39536 -13.11800 -12.86795 -12.75142 -12.28552 -12.16895 -11.64635 -11.31059 -10.95369 -10.77128 -10.52471 -10.44739 -10.22335 -9.96770 -9.31968 -8.98408 -8.84029 -8.53527 -8.16467 -7.71962 -5.98628 -4.00365 1.07201 2.25023 3.08049 3.37690 3.45026 3.52019 4.09047 4.50780 4.73741 4.84032 5.01073 5.16717 5.20239 5.45768 5.49367 5.70188 5.79861 6.01585 6.17926 6.23764 6.27552 6.36188 6.51181 6.53885 6.68631 6.77404 7.01266 7.06103 7.36969 7.44490 7.94955 8.38298 8.46595 8.94506 8.95382 9.64616 11.11115 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.029081 B = 0.009470 C = 0.007908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.602633 B = 2955.883099 C = 3539.738494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.050 4.050 3 C -0.007 4.007 4 N -0.204 5.204 5 N -0.322 5.322 6 C 0.149 3.851 7 C 0.034 3.966 8 C -0.480 4.480 9 H 0.055 0.945 10 C 0.081 3.919 11 N -0.886 5.886 12 Si 0.895 3.105 13 H -0.284 1.284 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.165 4.165 17 C -0.204 4.204 18 C 0.473 3.527 19 O -0.500 6.500 20 C -0.206 4.206 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.174 0.826 25 H 0.069 0.931 26 H 0.121 0.879 27 H 0.261 0.739 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 5.727 2.186 13.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.056 4.056 3 C -0.196 4.196 4 N -0.029 5.029 5 N -0.143 5.143 6 C 0.031 3.969 7 C 0.033 3.967 8 C -0.517 4.517 9 H 0.073 0.927 10 C -0.122 4.122 11 N -0.523 5.523 12 Si 0.723 3.277 13 H -0.210 1.210 14 H -0.211 1.211 15 H -0.198 1.198 16 C -0.204 4.204 17 C -0.242 4.242 18 C 0.270 3.730 19 O -0.375 6.375 20 C -0.236 4.236 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.191 0.809 25 H 0.087 0.913 26 H 0.139 0.861 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.099 5.534 2.368 12.626 hybrid contribution -0.438 -1.444 -0.404 1.562 sum -11.537 4.090 1.965 12.397 Atomic orbital electron populations 1.20797 0.90030 1.03409 1.02812 1.20997 0.97567 0.93412 0.93608 1.23022 0.88678 0.98602 1.09326 1.70775 1.09518 1.16197 1.06416 1.47242 1.10126 1.02197 1.54761 1.21934 0.71059 1.03591 1.00344 1.19108 0.97676 0.90710 0.89199 1.20304 1.20041 0.97214 1.14149 0.92699 1.24826 0.95461 0.97816 0.94123 1.69882 1.18873 1.37887 1.25696 0.86537 0.78159 0.84825 0.78198 1.21029 1.21144 1.19789 1.22797 0.92215 1.02261 1.03104 1.22895 0.97430 1.04365 0.99494 1.17904 0.89573 0.84528 0.81018 1.91053 1.65740 1.32164 1.48525 1.22613 0.93290 0.99622 1.08092 0.90385 0.90757 0.90986 0.80883 0.91304 0.86063 0.92936 0.91480 0.89958 0.90732 0.90799 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.06 36.00 0.36 -0.61 16 2 C -0.05 -0.67 5.91 -104.37 -0.62 -1.29 16 3 C -0.01 -0.10 11.03 -17.31 -0.19 -0.29 16 4 N -0.20 -3.70 10.08 30.68 0.31 -3.39 16 5 N -0.32 -6.92 3.06 -63.33 -0.19 -7.12 16 6 C 0.15 3.57 5.34 -4.04 -0.02 3.55 16 7 C 0.03 0.87 1.59 -155.66 -0.25 0.62 16 8 C -0.48 -13.66 8.20 -34.44 -0.28 -13.95 16 9 H 0.05 1.61 7.82 -52.48 -0.41 1.20 16 10 C 0.08 2.31 5.24 -17.82 -0.09 2.21 16 11 N -0.89 -25.57 12.24 55.43 0.68 -24.89 16 12 Si 0.89 22.84 29.54 -169.99 -5.02 17.82 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 16 C -0.17 -3.82 9.88 -26.73 -0.26 -4.09 16 17 C -0.20 -4.56 9.70 -26.73 -0.26 -4.82 16 18 C 0.47 10.54 7.46 -15.20 -0.11 10.43 16 19 O -0.50 -13.33 16.03 4.86 0.08 -13.25 16 20 C -0.21 -3.50 9.82 -39.06 -0.38 -3.89 16 21 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 23 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 24 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 25 H 0.07 1.51 7.87 -51.93 -0.41 1.10 16 26 H 0.12 3.29 6.22 -51.93 -0.32 2.97 16 27 H 0.26 7.23 8.32 -40.82 -0.34 6.89 16 28 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 29 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 30 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 31 H 0.07 1.53 7.40 -51.93 -0.38 1.14 16 32 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 278.93 15.07 4.20 4.20 Total: -1.00 -32.26 278.93 -6.09 -38.35 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.03 Total: 0.41 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -2.11 Total: -12.13 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.79 Total: -35.40 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.26 -6.09 -38.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235934093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.726 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds