Wall clock time and date at job start Sun Mar 29 2020 22:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.40474 * 120.84429 * 2 1 4 4 N 1.30409 * 120.46482 * 180.24946 * 3 2 1 5 5 N 1.28381 * 122.45115 * 0.03980 * 4 3 2 6 6 C 1.46503 * 119.16939 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46840 * 268.10540 * 6 5 4 8 8 C 1.50694 * 115.54792 * 271.38538 * 7 6 5 9 9 H 1.08008 * 120.00159 * 117.23119 * 8 7 6 10 10 C 1.37881 * 120.00089 * 297.23059 * 8 7 6 11 11 N 1.31512 * 119.99982 * 356.22553 * 10 8 7 12 12 Si 1.86808 * 119.99857 * 176.22466 * 10 8 7 13 13 H 1.48493 * 109.47201 * 89.99960 * 12 10 8 14 14 H 1.48498 * 109.47082 * 210.00284 * 12 10 8 15 15 H 1.48500 * 109.47057 * 330.00022 * 12 10 8 16 16 C 1.52997 * 117.49571 * 125.68633 * 7 6 5 17 17 C 1.52997 * 117.49976 * 57.06053 * 7 6 5 18 18 C 1.34671 * 121.66070 * 359.95946 * 5 4 3 19 19 O 1.22064 * 120.34718 * 180.02562 * 18 5 4 20 20 C 1.36609 * 120.84169 * 180.27098 * 2 1 3 21 21 H 1.09003 * 109.47728 * 269.72235 * 1 2 3 22 22 H 1.09003 * 109.46804 * 29.72897 * 1 2 3 23 23 H 1.09001 * 109.47074 * 149.72241 * 1 2 3 24 24 H 1.07997 * 119.76452 * 0.24463 * 3 2 1 25 25 H 1.08999 * 109.46885 * 28.10598 * 6 5 4 26 26 H 1.08997 * 109.47448 * 148.10235 * 6 5 4 27 27 H 0.96999 * 119.99522 * 185.03188 * 11 10 8 28 28 H 1.08997 * 117.50671 * 359.97438 * 16 7 6 29 29 H 1.09006 * 117.49997 * 145.02344 * 16 7 6 30 30 H 1.09001 * 117.49522 * 214.98045 * 17 7 6 31 31 H 1.08999 * 117.49872 * 359.97438 * 17 7 6 32 32 H 1.08002 * 121.09313 * 359.75616 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2271 1.2061 0.0000 4 7 3.5312 1.1974 -0.0049 5 7 4.2129 0.1096 -0.0106 6 6 5.6760 0.1837 -0.0164 7 6 6.1818 0.1658 -1.4604 8 6 6.4346 -1.2005 -2.0435 9 1 5.8631 -1.5383 -2.8955 10 6 7.3955 -2.0196 -1.4894 11 7 8.1423 -1.5809 -0.4998 12 14 7.6365 -3.7524 -2.1445 13 1 8.6396 -3.7326 -3.2392 14 1 8.1160 -4.6333 -1.0495 15 1 6.3452 -4.2686 -2.6656 16 6 7.1054 1.3037 -1.8994 17 6 5.6621 1.2518 -2.4045 18 6 3.6169 -1.0981 -0.0111 19 8 4.2885 -2.1173 -0.0162 20 6 2.2073 -1.1729 -0.0055 21 1 -0.3635 -0.0050 1.0276 22 1 -0.3633 0.8924 -0.5096 23 1 -0.3633 -0.8875 -0.5181 24 1 1.6971 2.1470 0.0040 25 1 5.9949 1.1061 0.4689 26 1 6.0853 -0.6706 0.5226 27 1 8.8662 -2.1291 -0.1587 28 1 7.3525 2.0654 -1.1599 29 1 7.8963 1.0642 -2.6104 30 1 5.5033 0.9780 -3.4475 31 1 4.9595 1.9788 -1.9971 32 1 1.6992 -2.1259 -0.0061 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235934093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:42 Heat of formation + Delta-G solvation = 31.192752 kcal Electronic energy + Delta-G solvation = -16720.061167 eV Core-core repulsion = 14068.126963 eV Total energy + Delta-G solvation = -2651.934203 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.77771 -38.63183 -38.50337 -36.05603 -34.08741 -32.41766 -30.12437 -27.99758 -27.06601 -25.44080 -23.15864 -22.95157 -21.24563 -19.24413 -18.68378 -17.88989 -17.05200 -16.85546 -16.63925 -15.66054 -15.27741 -14.80730 -14.39440 -14.19716 -13.91121 -13.74261 -13.46198 -13.30480 -13.13879 -12.99762 -12.77668 -12.47158 -12.13283 -11.84702 -11.71846 -10.91119 -10.73725 -10.57330 -10.50024 -10.09006 -9.31109 -8.15519 -6.20607 -0.21775 0.90729 1.29915 1.35817 1.43772 1.54589 2.39450 2.65641 3.13528 3.44311 3.49568 3.81332 3.85926 4.15951 4.19856 4.42616 4.49934 4.59750 4.74987 4.82208 4.89652 4.91835 5.06027 5.09284 5.16919 5.27379 5.29500 5.50100 5.53296 5.57726 5.74956 6.31620 6.75047 6.90458 7.45072 7.52114 8.93578 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.029081 B = 0.009470 C = 0.007908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.602633 B = 2955.883099 C = 3539.738494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.018 4.018 3 C 0.025 3.975 4 N -0.238 5.238 5 N -0.337 5.337 6 C 0.165 3.835 7 C 0.004 3.996 8 C -0.492 4.492 9 H 0.032 0.968 10 C 0.040 3.960 11 N -0.905 5.905 12 Si 0.939 3.061 13 H -0.267 1.267 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.160 4.160 17 C -0.179 4.179 18 C 0.454 3.546 19 O -0.572 6.572 20 C -0.234 4.234 21 H 0.103 0.897 22 H 0.106 0.894 23 H 0.079 0.921 24 H 0.231 0.769 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.261 0.739 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.429 7.845 2.108 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.024 4.024 3 C -0.165 4.165 4 N -0.060 5.060 5 N -0.156 5.156 6 C 0.045 3.955 7 C 0.002 3.998 8 C -0.529 4.529 9 H 0.050 0.950 10 C -0.161 4.161 11 N -0.543 5.543 12 Si 0.766 3.234 13 H -0.192 1.192 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.199 4.199 17 C -0.216 4.216 18 C 0.254 3.746 19 O -0.453 6.453 20 C -0.263 4.263 21 H 0.121 0.879 22 H 0.124 0.876 23 H 0.098 0.902 24 H 0.247 0.753 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.111 7.694 2.280 16.234 hybrid contribution 0.225 -1.966 -0.353 2.010 sum -13.887 5.729 1.926 15.145 Atomic orbital electron populations 1.20993 0.85484 1.05449 1.04862 1.21572 1.00394 0.91545 0.88853 1.24200 0.87499 1.01073 1.03728 1.70812 1.11361 1.14684 1.09164 1.46906 1.09368 1.02892 1.56481 1.21363 0.73154 1.02066 0.98895 1.19117 1.00111 0.89982 0.90562 1.20439 1.19549 0.99289 1.13628 0.94998 1.25379 0.95650 1.00425 0.94608 1.69952 1.19269 1.38697 1.26390 0.85845 0.77726 0.81672 0.78154 1.19193 1.20954 1.21039 1.22764 0.92305 1.01681 1.03106 1.22846 0.97178 1.02952 0.98652 1.18735 0.91481 0.83984 0.80381 1.90995 1.67378 1.34186 1.52707 1.22650 0.90792 1.02079 1.10823 0.87884 0.87572 0.90202 0.75272 0.90018 0.90458 0.93008 0.89455 0.91282 0.91115 0.88594 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.06 71.23 0.72 -0.50 16 2 C -0.02 -0.40 5.91 -19.70 -0.12 -0.51 16 3 C 0.02 0.58 11.03 85.45 0.94 1.52 16 4 N -0.24 -8.06 10.08 -56.85 -0.57 -8.63 16 5 N -0.34 -14.62 3.06 -472.40 -1.45 -16.06 16 6 C 0.17 8.15 5.34 86.38 0.46 8.62 16 7 C 0.00 0.18 1.59 -52.93 -0.08 0.10 16 8 C -0.49 -29.16 8.20 25.60 0.21 -28.95 16 9 H 0.03 1.97 7.82 -2.91 -0.02 1.94 16 10 C 0.04 2.37 5.24 84.66 0.44 2.81 16 11 N -0.90 -54.25 12.24 21.45 0.26 -53.98 16 12 Si 0.94 48.51 29.54 68.60 2.03 50.54 16 13 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 15 H -0.28 -15.10 7.11 99.48 0.71 -14.39 16 16 C -0.16 -7.39 9.88 30.60 0.30 -7.09 16 17 C -0.18 -7.85 9.70 30.60 0.30 -7.55 16 18 C 0.45 20.85 7.46 84.97 0.63 21.48 16 19 O -0.57 -32.54 16.03 -5.52 -0.09 -32.63 16 20 C -0.23 -7.72 9.82 22.61 0.22 -7.50 16 21 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.11 0.62 8.11 -2.39 -0.02 0.60 16 23 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 24 H 0.23 2.68 8.06 -2.91 -0.02 2.66 16 25 H 0.08 3.65 7.87 -2.39 -0.02 3.63 16 26 H 0.08 4.47 6.22 -2.39 -0.01 4.46 16 27 H 0.26 14.97 8.32 -92.71 -0.77 14.20 16 28 H 0.09 3.63 8.04 -2.39 -0.02 3.61 16 29 H 0.07 3.33 8.14 -2.38 -0.02 3.31 16 30 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.10 3.75 7.40 -2.39 -0.02 3.73 16 32 H 0.16 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -76.40 278.93 5.32 -71.08 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.11 Total: 7.26 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 4.03 Total: -17.57 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -1.76 Total: -78.67 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.09 Total: -32.63 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -76.40 5.32 -71.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235934093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.273 kcal (2) G-P(sol) polarization free energy of solvation -76.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds