Wall clock time and date at job start Sun Mar 29 2020 21:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 C 1.34774 * 120.59110 * 124.62153 * 12 11 10 14 14 O 1.21286 * 119.99766 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00284 * 0.02618 * 13 12 11 16 16 F 1.39893 * 109.46922 * 184.99800 * 15 13 12 17 17 F 1.39901 * 109.46745 * 304.99503 * 15 13 12 18 18 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 19 19 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 20 20 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 22 22 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 23 23 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 24 24 H 1.09004 * 109.67411 * 169.38330 * 11 10 9 25 25 H 1.08994 * 109.46878 * 64.99825 * 15 13 12 26 26 H 1.09004 * 109.60829 * 295.48016 * 18 12 11 27 27 H 1.08993 * 109.75563 * 175.05475 * 18 12 11 28 28 H 1.09001 * 109.60662 * 354.94142 * 19 9 7 29 29 H 1.08998 * 109.61756 * 115.28412 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 6 5.8770 -2.4918 3.4054 14 8 6.7202 -3.2946 3.0655 15 6 6.1049 -1.6278 4.6189 16 9 7.3944 -1.8498 5.1139 17 9 5.9667 -0.2813 4.2652 18 6 4.5005 -3.2084 1.5123 19 6 4.1992 -2.2929 0.3191 20 1 -0.4850 0.8400 -0.0004 21 1 4.2586 0.1714 1.7186 22 1 2.5201 0.1137 2.1099 23 1 2.7995 -1.9334 3.3902 24 1 4.0688 -0.8087 3.9359 25 1 5.3729 -1.8789 5.3864 26 1 3.6505 -3.8667 1.6921 27 1 5.3872 -3.8056 1.3004 28 1 3.8352 -2.8898 -0.5171 29 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236130329.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:11 Heat of formation + Delta-G solvation = -113.082778 kcal Electronic energy + Delta-G solvation = -17325.047592 eV Core-core repulsion = 14112.627602 eV Total energy + Delta-G solvation = -3212.419990 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.25904 -48.28549 -41.10071 -38.70403 -35.77498 -33.65210 -32.38583 -29.91590 -28.15626 -25.23086 -24.85965 -22.68841 -20.78592 -19.57800 -18.86086 -18.54779 -18.06320 -17.30008 -16.66045 -16.27731 -16.03158 -15.79255 -15.36712 -15.05945 -14.86249 -14.55223 -14.28465 -14.21872 -14.07850 -13.47184 -13.20582 -12.79406 -12.53275 -12.26555 -12.16151 -11.93728 -11.43832 -11.01299 -10.70103 -10.04569 -8.94406 -8.24611 -5.40529 0.98718 1.35253 1.47313 1.49796 1.54058 2.43657 2.63888 2.91456 2.96119 3.34164 3.51198 3.68732 4.01940 4.08150 4.26389 4.37849 4.50652 4.56157 4.69094 4.84402 4.97373 5.14337 5.28390 5.83682 6.04998 6.13874 6.64605 6.87829 7.60416 8.02630 8.93134 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.038035 B = 0.008438 C = 0.007487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.995860 B = 3317.638519 C = 3739.132474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.005 4.005 3 Si 0.892 3.108 4 H -0.305 1.305 5 H -0.292 1.292 6 H -0.240 1.240 7 C -0.267 4.267 8 H 0.055 0.945 9 N -0.612 5.612 10 C 0.125 3.875 11 C 0.083 3.917 12 N -0.583 5.583 13 C 0.465 3.535 14 O -0.555 6.555 15 C 0.262 3.738 16 F -0.189 7.189 17 F -0.189 7.189 18 C 0.103 3.897 19 C 0.130 3.870 20 H 0.264 0.736 21 H 0.034 0.966 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.117 0.883 25 H 0.191 0.809 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.143 -2.540 10.780 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.719 3.281 4 H -0.234 1.234 5 H -0.218 1.218 6 H -0.164 1.164 7 C -0.395 4.395 8 H 0.073 0.927 9 N -0.336 5.336 10 C -0.001 4.001 11 C -0.040 4.040 12 N -0.314 5.314 13 C 0.250 3.750 14 O -0.434 6.434 15 C 0.206 3.794 16 F -0.170 7.170 17 F -0.171 7.171 18 C -0.021 4.021 19 C 0.004 3.996 20 H 0.073 0.927 21 H 0.052 0.948 22 H 0.085 0.915 23 H 0.107 0.893 24 H 0.135 0.865 25 H 0.208 0.792 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.446 -2.862 10.583 14.471 hybrid contribution 0.055 1.129 -0.671 1.315 sum 9.500 -1.733 9.912 13.839 Atomic orbital electron populations 1.70182 1.07625 1.27600 1.51097 1.25632 0.95139 1.00005 0.99542 0.86700 0.81752 0.82394 0.77240 1.23370 1.21837 1.16357 1.18701 0.97267 0.95965 1.27582 0.92723 1.44445 1.17796 1.43547 1.27859 1.21810 0.99171 0.92700 0.86370 1.22795 0.91383 0.91216 0.98601 1.48121 1.17481 1.38205 1.27621 1.21582 0.82279 0.85222 0.85918 1.90748 1.44284 1.38960 1.69370 1.21935 0.84520 0.77233 0.95744 1.93019 1.41764 1.94368 1.87865 1.93029 1.95438 1.35108 1.93495 1.22174 1.02282 0.93110 0.84490 1.21447 0.90998 0.91480 0.95652 0.92700 0.94842 0.91496 0.89323 0.86485 0.79236 0.90069 0.88745 0.90233 0.95527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.89 13.97 21.65 0.30 -53.58 15 2 C 0.00 -0.25 4.80 84.86 0.41 0.16 15 3 Si 0.89 41.98 26.47 68.60 1.82 43.80 15 4 H -0.31 -14.97 7.11 99.48 0.71 -14.27 15 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 15 6 H -0.24 -10.48 4.99 99.48 0.50 -9.98 15 7 C -0.27 -13.98 9.84 84.04 0.83 -13.15 15 8 H 0.06 3.12 8.05 -2.91 -0.02 3.10 15 9 N -0.61 -26.54 2.71 -697.32 -1.89 -28.43 15 10 C 0.13 4.74 4.58 86.56 0.40 5.14 15 11 C 0.08 2.32 6.28 86.56 0.54 2.86 15 12 N -0.58 -16.99 2.95 -817.13 -2.41 -19.40 15 13 C 0.47 13.25 7.55 87.66 0.66 13.91 15 14 O -0.55 -19.68 16.03 -3.05 -0.05 -19.73 15 15 C 0.26 5.45 4.66 71.24 0.33 5.79 15 16 F -0.19 -4.71 16.95 44.97 0.76 -3.95 15 17 F -0.19 -4.41 15.28 44.97 0.69 -3.72 15 18 C 0.10 3.16 6.59 86.42 0.57 3.73 15 19 C 0.13 4.72 6.67 86.42 0.58 5.30 15 20 H 0.26 14.66 8.31 -92.71 -0.77 13.89 15 21 H 0.03 1.30 6.78 -2.39 -0.02 1.28 15 22 H 0.07 2.73 5.60 -2.39 -0.01 2.72 15 23 H 0.09 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.12 2.43 5.05 -2.39 -0.01 2.42 15 25 H 0.19 1.91 8.09 -2.39 -0.02 1.89 15 26 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 27 H 0.09 2.82 7.00 -2.39 -0.02 2.80 15 28 H 0.08 2.83 7.93 -2.39 -0.02 2.81 15 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 15 Total: -1.00 -66.31 245.75 4.50 -61.82 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: 0.96 Total: -0.52 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 4.31 Total: 23.72 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -3.99 Total: -101.41 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.05 Total: -19.73 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 1.45 Total: -7.67 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.82 Total: 43.80 kcal Total: -66.31 4.50 -61.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236130329.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.266 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds