Wall clock time and date at job start Sun Mar 29 2020 21:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38172 * 120.02308 * 2 1 4 4 C 1.38242 * 120.05426 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.10934 * 359.96113 * 4 3 2 6 6 C 1.38120 * 120.05825 * 359.97438 * 5 4 3 7 7 C 1.38705 * 120.02982 * 180.26149 * 2 1 3 8 8 O 1.35927 * 120.05966 * 359.97438 * 7 2 1 9 9 C 1.34260 * 117.00032 * 82.08259 * 8 7 2 10 10 O 1.20834 * 120.00321 * 5.54085 * 9 8 7 11 11 C 1.50697 * 120.00157 * 185.54142 * 9 8 7 12 12 C 1.53001 * 109.47326 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47116 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99950 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00154 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00158 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00158 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46874 * 90.00278 * 17 15 13 19 19 H 1.48503 * 109.47074 * 209.99689 * 17 15 13 20 20 H 1.48495 * 109.47219 * 330.00166 * 17 15 13 21 21 H 1.09002 * 109.47705 * 89.99800 * 1 2 3 22 22 H 1.09003 * 109.47233 * 209.99617 * 1 2 3 23 23 H 1.08992 * 109.47768 * 329.99511 * 1 2 3 24 24 H 1.08001 * 119.97292 * 0.02562 * 3 2 1 25 25 H 1.07995 * 119.94886 * 179.97438 * 4 3 2 26 26 H 1.08003 * 119.97164 * 180.02562 * 5 4 3 27 27 H 1.08004 * 120.03233 * 180.02562 * 6 5 4 28 28 H 1.08999 * 109.47185 * 300.00245 * 11 9 8 29 29 H 1.09005 * 109.46995 * 59.99747 * 11 9 8 30 30 H 1.08994 * 109.47294 * 299.99869 * 12 11 9 31 31 H 1.09000 * 109.47113 * 60.00489 * 12 11 9 32 32 H 0.96998 * 120.00520 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5807 1.1971 -0.0005 5 6 4.2751 0.0011 -0.0003 6 6 3.5887 -1.1974 0.0011 7 6 2.2011 -1.2008 -0.0055 8 8 1.5233 -2.3791 -0.0103 9 6 1.0761 -2.8201 -1.1969 10 8 1.3677 -2.2295 -2.2100 11 6 0.2104 -4.0517 -1.2655 12 6 -0.1595 -4.3347 -2.7229 13 6 -1.0247 -5.5667 -2.7914 14 1 -1.2851 -6.0948 -1.8860 15 6 -1.4839 -6.0197 -4.0099 16 7 -1.1665 -5.3769 -5.1126 17 14 -2.5557 -7.5472 -4.0950 18 1 -3.9840 -7.1566 -3.9821 19 1 -2.3323 -8.2372 -5.3909 20 1 -2.2031 -8.4621 -2.9798 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8898 0.5138 24 1 1.6582 2.1316 0.0004 25 1 4.1194 2.1331 -0.0010 26 1 5.3551 0.0043 -0.0003 27 1 4.1314 -2.1312 0.0017 28 1 0.7558 -4.9024 -0.8569 29 1 -0.6981 -3.8900 -0.6852 30 1 -0.7052 -3.4840 -3.1310 31 1 0.7487 -4.4963 -3.3035 32 1 -1.4898 -5.6954 -5.9699 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291048899.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:36 Heat of formation + Delta-G solvation = -69.884240 kcal Electronic energy + Delta-G solvation = -15752.553918 eV Core-core repulsion = 13063.943936 eV Total energy + Delta-G solvation = -2688.609982 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.01599 -38.63113 -36.40483 -33.62556 -32.75021 -31.29570 -30.20387 -27.07226 -26.03312 -23.40329 -22.15849 -21.25177 -19.90239 -17.84111 -16.92475 -16.50980 -15.93163 -15.63180 -14.69291 -14.53972 -14.33936 -13.68258 -13.24492 -13.01085 -12.83408 -12.41798 -12.27601 -12.00522 -11.61199 -11.41941 -11.27742 -10.98141 -10.67205 -10.49675 -10.10167 -10.04396 -9.68665 -9.22086 -8.86415 -8.55974 -8.40377 -6.03959 -4.09327 1.12643 1.29775 2.69284 3.12981 3.30312 3.36788 3.39700 3.82204 4.42479 4.76139 4.78307 4.95564 5.16902 5.21261 5.31570 5.41067 5.61160 5.69012 5.78775 5.90915 6.04767 6.13136 6.16944 6.28449 6.39446 6.46974 6.58630 6.79593 7.06187 7.62887 7.68430 7.94481 8.23313 8.39257 8.97567 9.55081 11.07016 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.054621 B = 0.004810 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.502459 B = 5819.619269 C = 5898.476251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.089 4.089 3 C -0.110 4.110 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.119 4.119 7 C 0.091 3.909 8 O -0.306 6.306 9 C 0.454 3.546 10 O -0.486 6.486 11 C -0.101 4.101 12 C 0.033 3.967 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.889 5.889 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.127 0.873 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 10.862 11.878 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.090 4.090 3 C -0.128 4.128 4 C -0.139 4.139 5 C -0.133 4.133 6 C -0.137 4.137 7 C 0.050 3.950 8 O -0.223 6.223 9 C 0.298 3.702 10 O -0.369 6.369 11 C -0.138 4.138 12 C -0.004 4.004 13 C -0.568 4.568 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 H 0.094 0.906 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.145 0.855 25 H 0.143 0.857 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.013 11.039 11.339 17.310 hybrid contribution -0.444 -0.733 -0.204 0.880 sum 6.569 10.306 11.136 16.534 Atomic orbital electron populations 1.20801 0.90563 1.03211 1.03133 1.20146 0.96911 0.92333 0.99576 1.20915 0.94233 0.96948 1.00722 1.21155 0.94217 0.98137 1.00376 1.20975 0.99912 0.91784 1.00586 1.21240 0.92739 0.99274 1.00455 1.18439 0.90400 0.84283 1.01884 1.84678 1.66068 1.35298 1.36260 1.25251 0.78120 0.86757 0.80098 1.90666 1.53744 1.57254 1.35273 1.21822 0.96916 0.90150 1.04934 1.19039 0.97517 0.97286 0.86567 1.21135 1.31631 1.10859 0.93126 0.92243 1.25015 0.96340 0.97218 0.95679 1.69992 1.44929 1.39811 0.98015 0.86533 0.80682 0.82921 0.77501 1.20576 1.21165 1.19755 0.90567 0.90918 0.91067 0.85506 0.85736 0.85482 0.85302 0.88696 0.88696 0.95539 0.95519 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.44 36.00 0.34 -1.27 16 2 C -0.09 -1.32 5.88 -104.48 -0.61 -1.93 16 3 C -0.11 -1.35 9.70 -39.60 -0.38 -1.73 16 4 C -0.12 -1.35 10.04 -39.56 -0.40 -1.74 16 5 C -0.11 -1.35 10.04 -39.61 -0.40 -1.75 16 6 C -0.12 -1.70 9.99 -39.43 -0.39 -2.10 16 7 C 0.09 1.50 4.93 -39.22 -0.19 1.31 16 8 O -0.31 -5.42 9.17 -23.61 -0.22 -5.64 16 9 C 0.45 9.14 7.48 36.00 0.27 9.41 16 10 O -0.49 -11.37 15.73 -18.75 -0.29 -11.66 16 11 C -0.10 -2.05 5.75 -27.88 -0.16 -2.21 16 12 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 13 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 17 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.07 0.99 7.54 -51.93 -0.39 0.60 16 23 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 24 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 25 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 27 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 28 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 29 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 285.66 15.07 4.30 4.30 Total: -1.00 -32.28 285.66 -7.11 -39.39 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.15 Total: -1.85 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -2.46 Total: -14.66 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.51 Total: -17.30 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.28 -7.11 -39.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291048899.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.498 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds