Wall clock time and date at job start Sun Mar 29 2020 21:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38172 * 120.02308 * 2 1 4 4 C 1.38242 * 120.05426 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.10934 * 359.96113 * 4 3 2 6 6 C 1.38120 * 120.05825 * 359.97438 * 5 4 3 7 7 C 1.38705 * 120.02982 * 180.26149 * 2 1 3 8 8 O 1.35927 * 120.05966 * 359.97438 * 7 2 1 9 9 C 1.34260 * 117.00032 * 82.08259 * 8 7 2 10 10 O 1.20834 * 120.00321 * 5.54085 * 9 8 7 11 11 C 1.50697 * 120.00157 * 185.54142 * 9 8 7 12 12 C 1.53001 * 109.47326 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47116 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99950 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00154 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00158 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00158 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46874 * 90.00278 * 17 15 13 19 19 H 1.48503 * 109.47074 * 209.99689 * 17 15 13 20 20 H 1.48495 * 109.47219 * 330.00166 * 17 15 13 21 21 H 1.09002 * 109.47705 * 89.99800 * 1 2 3 22 22 H 1.09003 * 109.47233 * 209.99617 * 1 2 3 23 23 H 1.08992 * 109.47768 * 329.99511 * 1 2 3 24 24 H 1.08001 * 119.97292 * 0.02562 * 3 2 1 25 25 H 1.07995 * 119.94886 * 179.97438 * 4 3 2 26 26 H 1.08003 * 119.97164 * 180.02562 * 5 4 3 27 27 H 1.08004 * 120.03233 * 180.02562 * 6 5 4 28 28 H 1.08999 * 109.47185 * 300.00245 * 11 9 8 29 29 H 1.09005 * 109.46995 * 59.99747 * 11 9 8 30 30 H 1.08994 * 109.47294 * 299.99869 * 12 11 9 31 31 H 1.09000 * 109.47113 * 60.00489 * 12 11 9 32 32 H 0.96998 * 120.00520 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5807 1.1971 -0.0005 5 6 4.2751 0.0011 -0.0003 6 6 3.5887 -1.1974 0.0011 7 6 2.2011 -1.2008 -0.0055 8 8 1.5233 -2.3791 -0.0103 9 6 1.0761 -2.8201 -1.1969 10 8 1.3677 -2.2295 -2.2100 11 6 0.2104 -4.0517 -1.2655 12 6 -0.1595 -4.3347 -2.7229 13 6 -1.0247 -5.5667 -2.7914 14 1 -1.2851 -6.0948 -1.8860 15 6 -1.4839 -6.0197 -4.0099 16 7 -1.1665 -5.3769 -5.1126 17 14 -2.5557 -7.5472 -4.0950 18 1 -3.9840 -7.1566 -3.9821 19 1 -2.3323 -8.2372 -5.3909 20 1 -2.2031 -8.4621 -2.9798 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8898 0.5138 24 1 1.6582 2.1316 0.0004 25 1 4.1194 2.1331 -0.0010 26 1 5.3551 0.0043 -0.0003 27 1 4.1314 -2.1312 0.0017 28 1 0.7558 -4.9024 -0.8569 29 1 -0.6981 -3.8900 -0.6852 30 1 -0.7052 -3.4840 -3.1310 31 1 0.7487 -4.4963 -3.3035 32 1 -1.4898 -5.6954 -5.9699 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291048899.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:36 Heat of formation + Delta-G solvation = -87.783772 kcal Electronic energy + Delta-G solvation = -15753.330100 eV Core-core repulsion = 13063.943936 eV Total energy + Delta-G solvation = -2689.386164 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.39861 -39.85349 -37.85763 -35.68301 -33.76732 -33.22967 -31.33861 -28.43131 -27.66885 -24.98983 -23.41215 -22.61643 -21.41939 -19.33846 -18.66660 -17.84531 -17.58269 -16.80930 -16.49080 -16.10991 -15.49121 -14.90869 -14.57225 -14.41531 -14.27562 -14.16079 -13.38125 -13.34109 -13.01599 -12.96536 -12.81545 -12.53118 -12.37848 -12.04422 -11.79927 -11.68999 -11.55868 -11.32175 -10.59045 -9.88219 -9.64237 -8.21075 -6.35351 0.03345 0.30220 1.09963 1.43504 1.45774 1.56885 1.81359 2.42705 2.75283 3.12968 3.71519 3.80127 3.87064 4.09563 4.30619 4.32985 4.37836 4.46254 4.59573 4.63453 4.66335 4.85750 4.97368 5.12490 5.27856 5.40029 5.42840 5.45109 5.46992 5.50885 5.78160 5.94077 6.11175 6.79213 6.86062 7.35294 8.91651 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.054621 B = 0.004810 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.502459 B = 5819.619269 C = 5898.476251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C -0.114 4.114 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.136 4.136 7 C 0.043 3.957 8 O -0.296 6.296 9 C 0.462 3.538 10 O -0.527 6.527 11 C -0.092 4.092 12 C 0.040 3.960 13 C -0.544 4.544 14 H 0.079 0.921 15 C -0.003 4.003 16 N -0.936 5.936 17 Si 0.975 3.025 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.256 1.256 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.102 0.898 24 H 0.156 0.844 25 H 0.164 0.836 26 H 0.160 0.840 27 H 0.132 0.868 28 H 0.118 0.882 29 H 0.120 0.880 30 H -0.009 1.009 31 H -0.011 1.011 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.205 11.349 13.593 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.109 4.109 3 C -0.131 4.131 4 C -0.129 4.129 5 C -0.132 4.132 6 C -0.154 4.154 7 C 0.002 3.998 8 O -0.212 6.212 9 C 0.308 3.692 10 O -0.414 6.414 11 C -0.129 4.129 12 C 0.003 3.997 13 C -0.582 4.582 14 H 0.097 0.903 15 C -0.200 4.200 16 N -0.576 5.576 17 Si 0.798 3.202 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.179 1.179 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.121 0.879 24 H 0.174 0.826 25 H 0.182 0.818 26 H 0.177 0.823 27 H 0.150 0.850 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.009 0.991 31 H 0.008 0.992 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.293 11.526 13.105 18.915 hybrid contribution -0.420 -0.739 -0.694 1.097 sum 6.873 10.787 12.412 17.823 Atomic orbital electron populations 1.20809 0.90274 1.04367 1.02133 1.20440 0.97560 0.92829 1.00110 1.21343 0.95132 0.97057 0.99613 1.21680 0.93990 0.99488 0.97703 1.21414 1.01607 0.91027 0.99121 1.21494 0.92178 1.00814 1.00899 1.18906 0.91497 0.84089 1.05285 1.84634 1.65919 1.36327 1.34338 1.25052 0.77489 0.86254 0.80371 1.90642 1.55426 1.58499 1.36865 1.21582 0.98566 0.91423 1.01300 1.18798 0.95300 0.95857 0.89783 1.21622 1.31416 1.11193 0.93981 0.90327 1.26091 0.97859 1.00889 0.95205 1.70161 1.46587 1.42025 0.98816 0.85302 0.78585 0.78442 0.77822 1.19644 1.21176 1.17938 0.92556 0.91809 0.87931 0.82606 0.81832 0.82267 0.85024 0.86351 0.86212 0.99102 0.99231 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.44 71.23 0.67 -2.51 16 2 C -0.11 -3.15 5.88 -19.77 -0.12 -3.27 16 3 C -0.11 -2.50 9.70 22.26 0.22 -2.28 16 4 C -0.11 -2.09 10.04 22.28 0.22 -1.87 16 5 C -0.11 -2.41 10.04 22.25 0.22 -2.18 16 6 C -0.14 -3.81 9.99 22.37 0.22 -3.59 16 7 C 0.04 1.42 4.93 22.51 0.11 1.53 16 8 O -0.30 -10.66 9.17 4.55 0.04 -10.62 16 9 C 0.46 19.20 7.48 71.23 0.53 19.74 16 10 O -0.53 -25.92 15.73 21.94 0.35 -25.58 16 11 C -0.09 -3.76 5.75 29.85 0.17 -3.59 16 12 C 0.04 2.18 4.26 29.85 0.13 2.30 16 13 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 14 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 15 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 16 N -0.94 -58.31 13.29 21.44 0.28 -58.03 16 17 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.06 1.76 7.54 -2.39 -0.02 1.74 16 23 H 0.10 1.98 8.09 -2.39 -0.02 1.96 16 24 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 25 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 26 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 27 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 28 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 29 H 0.12 4.31 8.14 -2.38 -0.02 4.30 16 30 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 31 H -0.01 -0.66 8.10 -2.39 -0.02 -0.68 16 32 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -72.80 285.66 6.88 -65.92 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.10 Total: 8.24 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 3.08 Total: -25.56 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.28 Total: -58.03 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: 0.39 Total: -36.20 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -72.80 6.88 -65.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291048899.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.865 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds