Wall clock time and date at job start Sun Mar 29 2020 22:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37975 * 120.46219 * 2 1 4 4 N 1.31953 * 120.83359 * 180.02562 * 3 2 1 5 5 C 1.31976 * 121.89978 * 0.02562 * 4 3 2 6 6 C 1.37925 * 120.83809 * 359.97438 * 5 4 3 7 7 C 1.39375 * 120.46632 * 180.02562 * 2 1 3 8 8 N 1.39544 * 120.85941 * 359.97438 * 7 2 1 9 9 C 1.34772 * 120.00166 * 145.93754 * 8 7 2 10 10 O 1.21273 * 119.99896 * 4.19068 * 9 8 7 11 11 C 1.50707 * 119.99835 * 184.19653 * 9 8 7 12 12 C 1.53003 * 109.46906 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47069 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99742 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99990 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00210 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00076 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47274 * 59.99727 * 17 15 13 19 19 H 1.48502 * 109.47207 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46961 * 299.99461 * 17 15 13 21 21 H 1.09002 * 109.46955 * 269.97291 * 1 2 3 22 22 H 1.09006 * 109.47450 * 29.97165 * 1 2 3 23 23 H 1.08999 * 109.47621 * 149.97663 * 1 2 3 24 24 H 1.07994 * 119.58220 * 0.02783 * 3 2 1 25 25 H 1.08000 * 119.58080 * 179.97438 * 5 4 3 26 26 H 1.08000 * 120.46229 * 179.97438 * 6 5 4 27 27 H 0.97005 * 119.99908 * 325.93481 * 8 7 2 28 28 H 1.09002 * 109.46763 * 299.99598 * 11 9 8 29 29 H 1.09002 * 109.47305 * 59.99871 * 11 9 8 30 30 H 1.08997 * 109.47036 * 300.00448 * 12 11 9 31 31 H 1.09002 * 109.46875 * 60.00059 * 12 11 9 32 32 H 0.96999 * 120.00679 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2064 1.1893 0.0000 4 7 3.5259 1.1979 -0.0005 5 6 4.2306 0.0820 -0.0015 6 6 3.6068 -1.1482 -0.0016 7 6 2.2136 -1.2013 -0.0005 8 7 1.5440 -2.4256 -0.0005 9 6 2.0687 -3.4807 -0.6547 10 8 3.1584 -3.3882 -1.1790 11 6 1.3013 -4.7752 -0.7347 12 6 2.1139 -5.8017 -1.5266 13 6 1.3468 -7.0964 -1.6061 14 1 0.3766 -7.1787 -1.1390 15 6 1.8837 -8.1757 -2.2752 16 7 3.0649 -8.0753 -2.8445 17 14 0.9325 -9.7804 -2.3744 18 1 -0.3656 -9.5451 -3.0562 19 1 1.7213 -10.7766 -3.1429 20 1 0.6855 -10.2949 -1.0035 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8903 -0.5134 23 1 -0.3634 -0.8897 -0.5142 24 1 1.6672 2.1250 0.0005 25 1 5.3094 0.1326 -0.0023 26 1 4.1894 -2.0575 -0.0028 27 1 0.7009 -2.5173 0.4703 28 1 1.1200 -5.1529 0.2716 29 1 0.3485 -4.6025 -1.2351 30 1 2.2949 -5.4237 -2.5328 31 1 3.0669 -5.9745 -1.0265 32 1 3.4429 -8.8347 -3.3150 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291694149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:10 Heat of formation + Delta-G solvation = -16.490225 kcal Electronic energy + Delta-G solvation = -15599.263401 eV Core-core repulsion = 12945.261508 eV Total energy + Delta-G solvation = -2654.001892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78265 -38.98461 -35.30885 -33.60429 -32.85436 -31.51188 -30.35211 -27.35427 -25.94417 -23.71111 -22.17735 -21.44633 -19.95569 -17.94329 -17.21904 -16.29393 -15.71996 -15.38232 -14.74515 -14.61976 -14.40665 -14.25425 -13.46950 -13.37473 -12.84676 -12.62248 -12.53553 -12.25102 -11.74222 -11.29125 -10.98115 -10.71384 -10.66949 -10.08210 -9.90766 -9.66287 -9.25259 -9.12908 -8.91008 -8.49501 -8.38267 -6.02874 -4.08190 1.11684 1.26912 2.93907 3.15726 3.30260 3.35599 3.36998 3.85049 4.41597 4.47226 4.72299 4.78733 4.97178 5.14870 5.32289 5.38490 5.44635 5.51197 5.74391 5.82138 5.94215 6.02562 6.03865 6.19771 6.43587 6.71833 6.85290 7.48733 7.64852 7.73557 7.97212 8.02120 8.26221 8.43427 8.99191 9.56010 11.07963 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.054177 B = 0.004675 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.696419 B = 5987.854274 C = 6407.207396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.176 4.176 3 C 0.111 3.889 4 N -0.502 5.502 5 C 0.106 3.894 6 C -0.174 4.174 7 C 0.198 3.802 8 N -0.681 5.681 9 C 0.509 3.491 10 O -0.508 6.508 11 C -0.128 4.128 12 C 0.037 3.963 13 C -0.531 4.531 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.154 0.846 25 H 0.156 0.844 26 H 0.152 0.848 27 H 0.411 0.589 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 15.083 7.633 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.181 4.181 3 C -0.046 4.046 4 N -0.212 5.212 5 C -0.049 4.049 6 C -0.197 4.197 7 C 0.094 3.906 8 N -0.327 5.327 9 C 0.299 3.701 10 O -0.380 6.380 11 C -0.168 4.168 12 C -0.001 4.001 13 C -0.569 4.569 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 H 0.089 0.911 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.171 0.829 25 H 0.174 0.826 26 H 0.170 0.830 27 H 0.248 0.752 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.974 15.726 7.099 17.706 hybrid contribution -1.331 -1.789 0.104 2.232 sum -5.305 13.936 7.203 16.560 Atomic orbital electron populations 1.20634 0.90162 1.03387 1.02361 1.20731 0.97523 0.92907 1.06925 1.22415 0.89904 0.96632 0.95681 1.67648 1.08046 1.31575 1.13963 1.22619 1.00309 0.87111 0.94903 1.22375 0.93727 1.00964 1.02595 1.17988 0.91842 0.85555 0.95260 1.43914 1.26094 1.08930 1.53798 1.21963 0.86902 0.85287 0.75903 1.90677 1.20569 1.82732 1.44040 1.21939 1.00281 0.91022 1.03565 1.18924 0.94868 0.91024 0.95275 1.21137 1.04007 0.96706 1.35047 0.92567 1.25015 0.94960 0.98920 0.95358 1.69977 1.16423 1.31244 1.35070 0.86631 0.79867 0.83168 0.78147 1.20213 1.21225 1.20202 0.91062 0.90901 0.91414 0.82896 0.82626 0.83039 0.75249 0.89647 0.89670 0.95702 0.95675 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.55 36.00 0.34 -0.55 16 2 C -0.18 -2.07 5.91 -104.30 -0.62 -2.68 16 3 C 0.11 1.31 10.85 -17.60 -0.19 1.12 16 4 N -0.50 -6.91 10.36 -13.34 -0.14 -7.05 16 5 C 0.11 1.45 11.17 -17.60 -0.20 1.25 16 6 C -0.17 -2.64 8.78 -39.26 -0.34 -2.99 16 7 C 0.20 2.81 6.33 -83.49 -0.53 2.28 16 8 N -0.68 -9.36 4.81 -9.71 -0.05 -9.41 16 9 C 0.51 9.22 7.69 -10.98 -0.08 9.14 16 10 O -0.51 -11.21 13.43 5.56 0.07 -11.13 16 11 C -0.13 -2.42 5.64 -27.88 -0.16 -2.58 16 12 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 13 C -0.53 -14.60 9.11 -34.44 -0.31 -14.92 16 14 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 23 H 0.07 0.57 7.27 -51.93 -0.38 0.20 16 24 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 25 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 26 H 0.15 2.54 6.27 -52.49 -0.33 2.21 16 27 H 0.41 4.18 7.94 -40.82 -0.32 3.86 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 279.88 15.07 4.22 4.22 Total: -1.00 -33.36 279.88 -6.43 -39.79 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.95 Total: 1.03 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.31 Total: -7.50 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.55 Total: -42.60 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.36 -6.43 -39.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291694149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.300 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds