Wall clock time and date at job start Sun Mar 29 2020 22:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37975 * 120.46219 * 2 1 4 4 N 1.31953 * 120.83359 * 180.02562 * 3 2 1 5 5 C 1.31976 * 121.89978 * 0.02562 * 4 3 2 6 6 C 1.37925 * 120.83809 * 359.97438 * 5 4 3 7 7 C 1.39375 * 120.46632 * 180.02562 * 2 1 3 8 8 N 1.39544 * 120.85941 * 359.97438 * 7 2 1 9 9 C 1.34772 * 120.00166 * 145.93754 * 8 7 2 10 10 O 1.21273 * 119.99896 * 4.19068 * 9 8 7 11 11 C 1.50707 * 119.99835 * 184.19653 * 9 8 7 12 12 C 1.53003 * 109.46906 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47069 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99742 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99990 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00210 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00076 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47274 * 59.99727 * 17 15 13 19 19 H 1.48502 * 109.47207 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46961 * 299.99461 * 17 15 13 21 21 H 1.09002 * 109.46955 * 269.97291 * 1 2 3 22 22 H 1.09006 * 109.47450 * 29.97165 * 1 2 3 23 23 H 1.08999 * 109.47621 * 149.97663 * 1 2 3 24 24 H 1.07994 * 119.58220 * 0.02783 * 3 2 1 25 25 H 1.08000 * 119.58080 * 179.97438 * 5 4 3 26 26 H 1.08000 * 120.46229 * 179.97438 * 6 5 4 27 27 H 0.97005 * 119.99908 * 325.93481 * 8 7 2 28 28 H 1.09002 * 109.46763 * 299.99598 * 11 9 8 29 29 H 1.09002 * 109.47305 * 59.99871 * 11 9 8 30 30 H 1.08997 * 109.47036 * 300.00448 * 12 11 9 31 31 H 1.09002 * 109.46875 * 60.00059 * 12 11 9 32 32 H 0.96999 * 120.00679 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2064 1.1893 0.0000 4 7 3.5259 1.1979 -0.0005 5 6 4.2306 0.0820 -0.0015 6 6 3.6068 -1.1482 -0.0016 7 6 2.2136 -1.2013 -0.0005 8 7 1.5440 -2.4256 -0.0005 9 6 2.0687 -3.4807 -0.6547 10 8 3.1584 -3.3882 -1.1790 11 6 1.3013 -4.7752 -0.7347 12 6 2.1139 -5.8017 -1.5266 13 6 1.3468 -7.0964 -1.6061 14 1 0.3766 -7.1787 -1.1390 15 6 1.8837 -8.1757 -2.2752 16 7 3.0649 -8.0753 -2.8445 17 14 0.9325 -9.7804 -2.3744 18 1 -0.3656 -9.5451 -3.0562 19 1 1.7213 -10.7766 -3.1429 20 1 0.6855 -10.2949 -1.0035 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8903 -0.5134 23 1 -0.3634 -0.8897 -0.5142 24 1 1.6672 2.1250 0.0005 25 1 5.3094 0.1326 -0.0023 26 1 4.1894 -2.0575 -0.0028 27 1 0.7009 -2.5173 0.4703 28 1 1.1200 -5.1529 0.2716 29 1 0.3485 -4.6025 -1.2351 30 1 2.2949 -5.4237 -2.5328 31 1 3.0669 -5.9745 -1.0265 32 1 3.4429 -8.8347 -3.3150 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291694149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:10 Heat of formation + Delta-G solvation = -39.492096 kcal Electronic energy + Delta-G solvation = -15600.260837 eV Core-core repulsion = 12945.261508 eV Total energy + Delta-G solvation = -2654.999328 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.94831 -40.26910 -36.55530 -35.60691 -33.81697 -33.23519 -31.71166 -28.33783 -27.67067 -25.09040 -23.47991 -22.79086 -21.40468 -19.14069 -18.83551 -17.87259 -17.13588 -16.61983 -16.47023 -15.98044 -15.67301 -15.25479 -14.93269 -14.39786 -14.22337 -14.14879 -13.57388 -13.37095 -13.22257 -12.79978 -12.70165 -12.53166 -11.95487 -11.90145 -11.67947 -11.35245 -11.09416 -10.56493 -10.37595 -9.95853 -9.58147 -8.18795 -6.32950 0.09959 0.18740 1.42904 1.46823 1.54377 1.55010 1.94584 2.43245 2.82962 3.14873 3.56350 3.71302 3.85464 3.95579 4.08208 4.35488 4.46101 4.50032 4.59266 4.80785 4.83114 4.92208 5.01836 5.16752 5.23973 5.33728 5.48867 5.59666 5.79063 5.83555 6.15160 6.32482 6.84824 7.00899 7.08235 7.37754 8.93578 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.054177 B = 0.004675 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.696419 B = 5987.854274 C = 6407.207396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.163 4.163 3 C 0.109 3.891 4 N -0.515 5.515 5 C 0.100 3.900 6 C -0.197 4.197 7 C 0.173 3.827 8 N -0.657 5.657 9 C 0.513 3.487 10 O -0.559 6.559 11 C -0.115 4.115 12 C 0.040 3.960 13 C -0.544 4.544 14 H 0.078 0.922 15 C -0.005 4.005 16 N -0.938 5.938 17 Si 0.973 3.027 18 H -0.262 1.262 19 H -0.290 1.290 20 H -0.262 1.262 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.067 0.933 24 H 0.190 0.810 25 H 0.171 0.829 26 H 0.126 0.874 27 H 0.431 0.569 28 H 0.113 0.887 29 H 0.113 0.887 30 H -0.017 1.017 31 H -0.015 1.015 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.438 15.981 8.749 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.167 4.167 3 C -0.049 4.049 4 N -0.225 5.225 5 C -0.056 4.056 6 C -0.219 4.219 7 C 0.070 3.930 8 N -0.304 5.304 9 C 0.303 3.697 10 O -0.435 6.435 11 C -0.155 4.155 12 C 0.003 3.997 13 C -0.582 4.582 14 H 0.097 0.903 15 C -0.203 4.203 16 N -0.578 5.578 17 Si 0.797 3.203 18 H -0.187 1.187 19 H -0.215 1.215 20 H -0.187 1.187 21 H 0.113 0.887 22 H 0.112 0.888 23 H 0.086 0.914 24 H 0.207 0.793 25 H 0.189 0.811 26 H 0.144 0.856 27 H 0.271 0.729 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.001 0.999 31 H 0.003 0.997 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.131 16.662 8.261 19.918 hybrid contribution -0.361 -1.944 -0.221 1.990 sum -7.491 14.718 8.039 18.368 Atomic orbital electron populations 1.20767 0.87160 1.04423 1.04150 1.21095 0.99531 0.91531 1.04565 1.23083 0.89421 0.98160 0.94216 1.67715 1.09301 1.31294 1.14228 1.22822 1.01250 0.86659 0.94867 1.22309 0.94623 1.00630 1.04345 1.18210 0.91755 0.86330 0.96747 1.43459 1.26389 1.07883 1.52697 1.21736 0.86083 0.86030 0.75822 1.90677 1.22685 1.83598 1.46544 1.21687 0.99908 0.89757 1.04143 1.18711 0.94316 0.93001 0.93696 1.21672 1.04790 0.97165 1.34535 0.90348 1.26112 0.95877 1.03411 0.94897 1.70164 1.18694 1.32512 1.36407 0.85390 0.78440 0.77759 0.78761 1.18679 1.21540 1.18656 0.88711 0.88850 0.91449 0.79277 0.81149 0.85649 0.72888 0.86861 0.86913 0.99854 0.99699 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.55 71.23 0.68 -0.65 16 2 C -0.16 -3.39 5.91 -19.66 -0.12 -3.50 16 3 C 0.11 2.26 10.85 84.61 0.92 3.18 16 4 N -0.52 -13.48 10.36 -196.12 -2.03 -15.51 16 5 C 0.10 2.74 11.17 84.60 0.95 3.68 16 6 C -0.20 -6.16 8.78 22.48 0.20 -5.97 16 7 C 0.17 4.77 6.33 38.47 0.24 5.02 16 8 N -0.66 -17.24 4.81 -303.01 -1.46 -18.70 16 9 C 0.51 18.75 7.69 87.66 0.67 19.42 16 10 O -0.56 -26.09 13.43 -3.01 -0.04 -26.13 16 11 C -0.12 -4.28 5.64 29.85 0.17 -4.11 16 12 C 0.04 2.16 4.26 29.85 0.13 2.29 16 13 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 14 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 15 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 16 N -0.94 -58.67 13.29 21.45 0.28 -58.39 16 17 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 21 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.09 0.83 8.09 -2.38 -0.02 0.81 16 23 H 0.07 0.88 7.27 -2.39 -0.02 0.86 16 24 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 25 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 26 H 0.13 4.57 6.27 -2.91 -0.02 4.56 16 27 H 0.43 7.56 7.94 -92.70 -0.74 6.82 16 28 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 29 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 30 H -0.02 -1.04 8.10 -2.39 -0.02 -1.06 16 31 H -0.02 -0.94 8.10 -2.39 -0.02 -0.96 16 32 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -76.29 279.88 3.71 -72.58 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.39 Total: 10.99 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.53 Total: -10.19 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -3.20 Total: -92.60 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.04 Total: -26.13 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -76.29 3.71 -72.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291694149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.086 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds