Wall clock time and date at job start Sun Mar 29 2020 21:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46490 * 109.47077 * 169.14141 * 3 2 1 5 5 C 1.37101 * 119.99841 * 96.32423 * 4 3 2 6 6 H 1.08005 * 120.00182 * 216.25578 * 5 4 3 7 7 C 1.38957 * 120.00154 * 36.25696 * 5 4 3 8 8 N 1.31409 * 119.99426 * 23.40666 * 7 5 4 9 9 Si 1.86796 * 119.99932 * 203.41121 * 7 5 4 10 10 H 1.48496 * 109.47440 * 59.99674 * 9 7 5 11 11 H 1.48503 * 109.47067 * 299.99865 * 9 7 5 12 12 H 1.48496 * 109.47062 * 179.97438 * 9 7 5 13 13 C 1.34774 * 120.00513 * 276.32663 * 4 3 2 14 14 O 1.21287 * 120.00317 * 175.42547 * 13 4 3 15 15 C 1.50704 * 119.99488 * 355.41954 * 13 4 3 16 16 H 1.08993 * 109.63952 * 334.03217 * 15 13 4 17 17 C 1.53025 * 109.63882 * 94.45255 * 15 13 4 18 18 C 1.50066 * 110.14562 * 169.11947 * 17 15 13 19 19 C 1.29437 * 124.07860 * 342.86853 * 18 17 15 20 20 C 1.50068 * 124.07372 * 0.48996 * 19 18 17 21 21 C 1.52976 * 110.28806 * 342.97777 * 20 19 18 22 22 H 1.09000 * 109.46708 * 49.13887 * 3 2 1 23 23 H 1.09004 * 109.46772 * 289.14464 * 3 2 1 24 24 H 0.96990 * 120.00491 * 5.25231 * 8 7 5 25 25 H 1.09001 * 109.35709 * 289.32781 * 17 15 13 26 26 H 1.09002 * 109.36268 * 48.91190 * 17 15 13 27 27 H 1.08006 * 117.96393 * 162.88875 * 18 17 15 28 28 H 1.07996 * 117.96613 * 180.47110 * 19 18 17 29 29 H 1.09004 * 109.36031 * 103.05535 * 20 19 18 30 30 H 1.09006 * 109.36036 * 222.64086 * 20 19 18 31 31 H 1.08996 * 109.47378 * 289.53960 * 21 20 19 32 32 H 1.09000 * 109.78858 * 168.91747 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0958 1.3573 -0.2602 5 6 3.4472 2.1716 0.7853 6 1 3.2455 3.2315 0.7357 7 6 4.0629 1.6334 1.9087 8 7 4.7169 0.4972 1.8185 9 14 3.9607 2.5249 3.5470 10 1 2.5376 2.6612 3.9485 11 1 4.5692 3.8732 3.4157 12 1 4.6936 1.7489 4.5794 13 6 3.1990 1.8049 -1.5272 14 8 3.5231 2.9542 -1.7399 15 6 2.9117 0.8774 -2.6797 16 1 3.0909 -0.1533 -2.3739 17 6 1.4545 1.0380 -3.1183 18 6 1.2249 0.3265 -4.4194 19 6 2.1720 -0.0471 -5.2187 20 6 3.6326 0.1698 -4.9509 21 6 3.8210 1.2295 -3.8639 22 1 2.9717 -0.6715 -0.7772 23 1 2.9715 -0.3362 0.9709 24 1 4.8352 0.0729 0.9544 25 1 0.7992 0.6169 -2.3557 26 1 1.2286 2.0973 -3.2409 27 1 0.2060 0.1131 -4.7071 28 1 1.8938 -0.5461 -6.1352 29 1 4.0822 -0.7665 -4.6201 30 1 4.1228 0.4998 -5.8669 31 1 3.5463 2.2077 -4.2586 32 1 4.8606 1.2417 -3.5366 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299255658.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:07 Heat of formation + Delta-G solvation = 6.053513 kcal Electronic energy + Delta-G solvation = -16605.726379 eV Core-core repulsion = 13952.702056 eV Total energy + Delta-G solvation = -2653.024323 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.68652 -37.40614 -36.16329 -34.82479 -31.98316 -30.79888 -30.49401 -27.68517 -24.98145 -23.22427 -22.36665 -19.45962 -18.20878 -17.67161 -17.08305 -16.15818 -15.76211 -14.80983 -14.10760 -13.93728 -13.81752 -13.48685 -13.23106 -13.06667 -12.69063 -12.42076 -12.07113 -12.01425 -11.94203 -11.48860 -11.26150 -10.89759 -10.62009 -10.34802 -10.25788 -10.13377 -10.03143 -9.10617 -8.88055 -8.55646 -8.03381 -6.76314 -4.18616 2.38593 3.08098 3.25268 3.27342 3.33027 3.51422 3.60457 4.12623 4.50218 4.60098 4.85595 4.94283 5.07520 5.17640 5.41217 5.46277 5.50991 5.57931 5.71654 5.79086 5.96092 6.02011 6.13732 6.16755 6.20808 6.40769 6.57767 6.76281 7.04421 7.72928 7.95315 8.03420 8.43640 8.69420 9.16516 9.61406 10.49626 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.033194 B = 0.008184 C = 0.007347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.314692 B = 3420.571180 C = 3810.317221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.208 3.792 3 C 0.174 3.826 4 N -0.453 5.453 5 C -0.398 4.398 6 H 0.089 0.911 7 C 0.010 3.990 8 N -0.876 5.876 9 Si 1.073 2.927 10 H -0.284 1.284 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.477 3.523 14 O -0.556 6.556 15 C -0.109 4.109 16 H 0.084 0.916 17 C -0.083 4.083 18 C -0.147 4.147 19 C -0.160 4.160 20 C -0.090 4.090 21 C -0.097 4.097 22 H 0.104 0.896 23 H 0.138 0.862 24 H 0.274 0.726 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 -4.500 -8.293 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.110 4.110 3 C 0.047 3.953 4 N -0.175 5.175 5 C -0.525 4.525 6 H 0.106 0.894 7 C -0.196 4.196 8 N -0.512 5.512 9 Si 0.899 3.101 10 H -0.210 1.210 11 H -0.207 1.207 12 H -0.202 1.202 13 C 0.265 3.735 14 O -0.436 6.436 15 C -0.130 4.130 16 H 0.102 0.898 17 C -0.120 4.120 18 C -0.165 4.165 19 C -0.178 4.178 20 C -0.127 4.127 21 C -0.135 4.135 22 H 0.121 0.879 23 H 0.155 0.845 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.456 -4.011 -6.784 8.255 hybrid contribution -0.146 -0.028 -1.642 1.649 sum -2.602 -4.039 -8.425 9.699 Atomic orbital electron populations 1.81043 1.13281 1.08635 1.10234 1.30309 0.96113 0.92624 0.91969 1.19339 0.80155 0.89010 1.06821 1.43479 1.56654 1.11975 1.05384 1.20343 1.41538 0.93783 0.96837 0.89366 1.26453 0.91926 0.97746 1.03506 1.70828 1.32535 1.18770 1.29026 0.83421 0.76941 0.75552 0.74210 1.20990 1.20708 1.20238 1.20382 0.80740 0.88903 0.83455 1.90541 1.49968 1.19016 1.84118 1.21413 0.96345 0.99976 0.95284 0.89798 1.20408 0.95300 1.01013 0.95288 1.22030 0.98743 0.99571 0.96146 1.22025 0.95115 1.01448 0.99225 1.20473 0.93818 0.99417 0.99022 1.21375 0.99394 0.99000 0.93735 0.87881 0.84478 0.91437 0.91094 0.90343 0.88099 0.88201 0.90960 0.91066 0.90986 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.35 18.27 42.16 0.77 -8.58 16 2 C 0.21 4.11 13.88 -20.76 -0.29 3.82 16 3 C 0.17 3.37 4.63 -6.83 -0.03 3.34 16 4 N -0.45 -10.57 2.30 -117.94 -0.27 -10.84 16 5 C -0.40 -10.47 8.91 -14.93 -0.13 -10.61 16 6 H 0.09 2.50 7.72 -52.48 -0.41 2.10 16 7 C 0.01 0.25 4.85 -17.47 -0.08 0.16 16 8 N -0.88 -22.26 12.23 55.50 0.68 -21.58 16 9 Si 1.07 22.82 29.98 -169.99 -5.10 17.72 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 13 C 0.48 10.84 6.55 -10.98 -0.07 10.76 16 14 O -0.56 -14.76 16.24 5.55 0.09 -14.67 16 15 C -0.11 -1.90 1.98 -91.55 -0.18 -2.08 16 16 H 0.08 1.32 5.85 -51.93 -0.30 1.02 16 17 C -0.08 -1.37 5.41 -28.18 -0.15 -1.52 16 18 C -0.15 -2.02 9.80 -35.90 -0.35 -2.37 16 19 C -0.16 -1.99 9.81 -35.90 -0.35 -2.34 16 20 C -0.09 -1.11 6.11 -28.20 -0.17 -1.29 16 21 C -0.10 -1.53 4.84 -26.54 -0.13 -1.66 16 22 H 0.10 1.62 5.94 -51.93 -0.31 1.31 16 23 H 0.14 2.82 5.45 -51.93 -0.28 2.54 16 24 H 0.27 6.77 6.98 -40.82 -0.29 6.48 16 25 H 0.07 1.23 5.96 -51.93 -0.31 0.92 16 26 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 27 H 0.10 1.24 8.06 -52.48 -0.42 0.82 16 28 H 0.10 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 271.74 15.07 4.10 4.10 Total: -1.00 -29.67 271.74 -5.33 -34.99 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -3.64 Total: 2.63 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.95 Total: -3.77 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 1.18 Total: -41.00 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.09 Total: -14.67 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.10 Total: 17.72 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.67 -5.33 -34.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299255658.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.047 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds