Wall clock time and date at job start Sun Mar 29 2020 22:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38669 * 120.41814 * 2 1 4 4 C 1.38629 * 118.42152 * 179.78130 * 3 2 1 5 5 C 1.38229 * 119.15520 * 0.47453 * 4 3 2 6 6 C 1.50710 * 119.61447 * 179.74352 * 5 4 3 7 7 N 1.46502 * 109.46595 * 95.02642 * 6 5 4 8 8 C 1.34784 * 119.99600 * 180.02562 * 7 6 5 9 9 O 1.21689 * 119.99943 * 359.97438 * 8 7 6 10 10 C 1.46376 * 119.99692 * 180.02562 * 8 7 6 11 11 H 1.07998 * 120.00287 * 359.97438 * 10 8 7 12 12 C 1.40047 * 119.99419 * 180.02562 * 10 8 7 13 13 N 1.30669 * 120.00485 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 119.99670 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47259 * 59.99444 * 14 12 10 16 16 H 1.48501 * 109.47207 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46762 * 299.99606 * 14 12 10 18 18 N 1.31848 * 120.76985 * 359.77088 * 5 4 3 19 19 C 1.31889 * 121.72478 * 359.97438 * 18 5 4 20 20 C 1.50695 * 119.62036 * 180.02562 * 19 18 5 21 21 H 1.09002 * 109.47152 * 269.71734 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.71835 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.71815 * 1 2 3 24 24 H 1.08001 * 120.79148 * 0.02947 * 3 2 1 25 25 H 1.08000 * 120.42066 * 180.22857 * 4 3 2 26 26 H 1.09000 * 109.46874 * 215.02149 * 6 5 4 27 27 H 1.08999 * 109.46921 * 335.02670 * 6 5 4 28 28 H 0.96992 * 120.00331 * 0.02562 * 7 6 5 29 29 H 0.96996 * 119.99816 * 180.02562 * 13 12 10 30 30 H 1.09006 * 109.46664 * 269.97784 * 20 19 18 31 31 H 1.09000 * 109.46940 * 29.97482 * 20 19 18 32 32 H 1.08996 * 109.47332 * 149.97748 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 0.0047 5 6 4.2255 -0.0823 -0.0009 6 6 5.7313 -0.1469 -0.0018 7 7 6.2144 -0.2946 1.3734 8 6 7.5375 -0.3735 1.6179 9 8 8.3307 -0.3224 0.6964 10 6 8.0202 -0.5216 2.9918 11 1 7.3163 -0.5674 3.8096 12 6 9.3951 -0.6030 3.2459 13 7 10.2468 -0.5472 2.2566 14 14 10.0112 -0.7914 4.9994 15 1 9.4634 -2.0413 5.5850 16 1 11.4949 -0.8544 4.9986 17 1 9.5651 0.3713 5.8083 18 7 3.5255 -1.1996 -0.0060 19 6 2.2066 -1.1917 -0.0054 20 6 1.4539 -2.4971 -0.0108 21 1 -0.3633 -0.0051 1.0277 22 1 -0.3633 -0.8875 -0.5182 23 1 -0.3633 0.8925 -0.5095 24 1 1.6890 2.1423 0.0005 25 1 4.1735 2.0592 0.0085 26 1 6.0579 -1.0007 -0.5953 27 1 6.1339 0.7701 -0.4319 28 1 5.5822 -0.3357 2.1078 29 1 11.1990 -0.6039 2.4326 30 1 1.2718 -2.8072 -1.0398 31 1 2.0439 -3.2587 0.4992 32 1 0.5018 -2.3697 0.5042 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313951061.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:13 Heat of formation + Delta-G solvation = -18.219633 kcal Electronic energy + Delta-G solvation = -15557.394125 eV Core-core repulsion = 12903.317240 eV Total energy + Delta-G solvation = -2654.076885 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35806 -37.21640 -34.63586 -32.99378 -32.66119 -31.96413 -28.48715 -28.19073 -26.12734 -24.12709 -22.34183 -21.04422 -19.63388 -17.38973 -16.56814 -15.71598 -15.29580 -14.89738 -14.66454 -14.07567 -13.91320 -13.58063 -13.03107 -12.90064 -12.71812 -12.52209 -12.33654 -12.12639 -11.96845 -11.35000 -11.22947 -11.08664 -10.84946 -10.42066 -10.22565 -9.62372 -9.24501 -8.81217 -8.63727 -7.57197 -7.47451 -6.14976 -4.60448 1.14152 1.37368 3.18862 3.23248 3.25474 3.76885 4.15572 4.31742 4.62539 4.68348 4.78525 4.92264 4.96926 5.19274 5.38785 5.45082 5.48257 5.55533 5.59526 5.64680 5.80681 5.84997 6.00778 6.15240 6.26941 6.41785 6.55261 6.83439 7.46860 7.94958 8.10133 8.20039 8.36096 9.05713 9.55988 10.63315 10.81500 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.042974 B = 0.004919 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.396949 B = 5690.946387 C = 5827.906606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.148 4.148 3 C -0.077 4.077 4 C -0.160 4.160 5 C 0.128 3.872 6 C 0.182 3.818 7 N -0.759 5.759 8 C 0.556 3.444 9 O -0.580 6.580 10 C -0.544 4.544 11 H 0.067 0.933 12 C 0.088 3.912 13 N -0.768 5.768 14 Si 0.909 3.091 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.268 1.268 18 N -0.468 5.468 19 C 0.124 3.876 20 C -0.104 4.104 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.132 0.868 25 H 0.136 0.864 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.380 0.620 29 H 0.269 0.731 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.447 1.565 -2.515 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.151 4.151 3 C -0.103 4.103 4 C -0.181 4.181 5 C -0.010 4.010 6 C 0.057 3.943 7 N -0.415 5.415 8 C 0.361 3.639 9 O -0.463 6.463 10 C -0.581 4.581 11 H 0.085 0.915 12 C -0.132 4.132 13 N -0.397 5.397 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.193 1.193 18 N -0.177 5.177 19 C -0.014 4.014 20 C -0.161 4.161 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.150 0.850 25 H 0.154 0.846 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.211 0.789 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.188 0.799 -3.293 17.519 hybrid contribution -0.448 0.810 1.205 1.519 sum -17.636 1.609 -2.089 17.832 Atomic orbital electron populations 1.20730 0.90552 1.02835 1.02357 1.20681 0.97230 0.93765 1.03375 1.21431 0.93980 0.97884 0.96961 1.22036 0.94943 0.99347 1.01760 1.21576 0.97086 0.88090 0.94283 1.19731 0.84522 1.01799 0.88297 1.46109 1.08586 1.82055 1.04743 1.18230 0.78823 0.76410 0.90484 1.90600 1.53977 1.55210 1.46510 1.20828 0.92080 1.53782 0.91419 0.91497 1.25698 0.96678 0.92696 0.98095 1.70010 1.02498 1.35329 1.31877 0.86427 0.77784 0.79472 0.82999 1.19286 1.20545 1.19310 1.67410 1.07262 1.31408 1.11656 1.21165 0.89728 0.94897 0.95646 1.20727 0.99102 0.93481 1.02827 0.91104 0.91142 0.91603 0.85046 0.84581 0.91548 0.91698 0.78856 0.92054 0.90621 0.90350 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.21 36.01 0.33 -0.52 16 2 C -0.15 -1.76 5.90 -104.48 -0.62 -2.38 16 3 C -0.08 -0.92 9.86 -39.28 -0.39 -1.31 16 4 C -0.16 -2.32 9.72 -39.44 -0.38 -2.70 16 5 C 0.13 2.23 6.15 -82.58 -0.51 1.72 16 6 C 0.18 3.79 5.98 -5.19 -0.03 3.76 16 7 N -0.76 -18.08 5.54 -62.89 -0.35 -18.43 16 8 C 0.56 16.38 7.75 -12.98 -0.10 16.28 16 9 O -0.58 -19.25 15.02 5.20 0.08 -19.17 16 10 C -0.54 -15.80 9.54 -35.63 -0.34 -16.14 16 11 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 12 C 0.09 2.51 5.50 -17.37 -0.10 2.41 16 13 N -0.77 -23.45 11.83 55.55 0.66 -22.79 16 14 Si 0.91 20.50 29.56 -169.99 -5.02 15.48 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 N -0.47 -8.13 10.19 -5.74 -0.06 -8.19 16 19 C 0.12 1.73 6.78 -82.59 -0.56 1.17 16 20 C -0.10 -1.09 9.36 36.00 0.34 -0.75 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.48 6.72 -51.93 -0.35 0.13 16 23 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 24 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 25 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 26 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 28 H 0.38 8.31 8.44 -40.82 -0.34 7.97 16 29 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.59 6.69 -51.93 -0.35 0.24 16 LS Contribution 282.02 15.07 4.25 4.25 Total: -1.00 -35.51 282.02 -6.76 -42.28 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.96 Total: 5.04 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.35 Total: 1.54 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.25 Total: -49.41 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.08 Total: -19.17 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.51 -6.76 -42.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313951061.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.056 kcal (2) G-P(sol) polarization free energy of solvation -35.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds