Wall clock time and date at job start Sun Mar 29 2020 22:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38669 * 120.41814 * 2 1 4 4 C 1.38629 * 118.42152 * 179.78130 * 3 2 1 5 5 C 1.38229 * 119.15520 * 0.47453 * 4 3 2 6 6 C 1.50710 * 119.61447 * 179.74352 * 5 4 3 7 7 N 1.46502 * 109.46595 * 95.02642 * 6 5 4 8 8 C 1.34784 * 119.99600 * 180.02562 * 7 6 5 9 9 O 1.21689 * 119.99943 * 359.97438 * 8 7 6 10 10 C 1.46376 * 119.99692 * 180.02562 * 8 7 6 11 11 H 1.07998 * 120.00287 * 359.97438 * 10 8 7 12 12 C 1.40047 * 119.99419 * 180.02562 * 10 8 7 13 13 N 1.30669 * 120.00485 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 119.99670 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47259 * 59.99444 * 14 12 10 16 16 H 1.48501 * 109.47207 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46762 * 299.99606 * 14 12 10 18 18 N 1.31848 * 120.76985 * 359.77088 * 5 4 3 19 19 C 1.31889 * 121.72478 * 359.97438 * 18 5 4 20 20 C 1.50695 * 119.62036 * 180.02562 * 19 18 5 21 21 H 1.09002 * 109.47152 * 269.71734 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.71835 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.71815 * 1 2 3 24 24 H 1.08001 * 120.79148 * 0.02947 * 3 2 1 25 25 H 1.08000 * 120.42066 * 180.22857 * 4 3 2 26 26 H 1.09000 * 109.46874 * 215.02149 * 6 5 4 27 27 H 1.08999 * 109.46921 * 335.02670 * 6 5 4 28 28 H 0.96992 * 120.00331 * 0.02562 * 7 6 5 29 29 H 0.96996 * 119.99816 * 180.02562 * 13 12 10 30 30 H 1.09006 * 109.46664 * 269.97784 * 20 19 18 31 31 H 1.09000 * 109.46940 * 29.97482 * 20 19 18 32 32 H 1.08996 * 109.47332 * 149.97748 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 0.0047 5 6 4.2255 -0.0823 -0.0009 6 6 5.7313 -0.1469 -0.0018 7 7 6.2144 -0.2946 1.3734 8 6 7.5375 -0.3735 1.6179 9 8 8.3307 -0.3224 0.6964 10 6 8.0202 -0.5216 2.9918 11 1 7.3163 -0.5674 3.8096 12 6 9.3951 -0.6030 3.2459 13 7 10.2468 -0.5472 2.2566 14 14 10.0112 -0.7914 4.9994 15 1 9.4634 -2.0413 5.5850 16 1 11.4949 -0.8544 4.9986 17 1 9.5651 0.3713 5.8083 18 7 3.5255 -1.1996 -0.0060 19 6 2.2066 -1.1917 -0.0054 20 6 1.4539 -2.4971 -0.0108 21 1 -0.3633 -0.0051 1.0277 22 1 -0.3633 -0.8875 -0.5182 23 1 -0.3633 0.8925 -0.5095 24 1 1.6890 2.1423 0.0005 25 1 4.1735 2.0592 0.0085 26 1 6.0579 -1.0007 -0.5953 27 1 6.1339 0.7701 -0.4319 28 1 5.5822 -0.3357 2.1078 29 1 11.1990 -0.6039 2.4326 30 1 1.2718 -2.8072 -1.0398 31 1 2.0439 -3.2587 0.4992 32 1 0.5018 -2.3697 0.5042 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313951061.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:13 Heat of formation + Delta-G solvation = -44.604805 kcal Electronic energy + Delta-G solvation = -15558.538272 eV Core-core repulsion = 12903.317240 eV Total energy + Delta-G solvation = -2655.221032 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.47654 -39.35123 -36.10397 -34.68654 -34.06170 -33.74928 -29.90867 -29.25758 -27.98335 -25.47810 -23.39355 -22.28121 -21.71742 -19.41568 -17.71255 -17.52692 -16.92885 -16.25909 -15.96750 -15.52839 -15.43247 -15.27776 -14.37171 -14.10767 -13.71884 -13.66075 -13.45018 -13.29212 -13.22940 -13.02355 -12.90196 -12.68783 -12.65389 -12.17715 -12.04649 -10.93392 -10.67344 -10.38807 -10.03221 -9.57649 -9.56202 -8.30780 -6.88927 0.03560 0.33273 1.39539 1.43588 1.55560 2.24067 2.44393 2.61727 3.12655 3.33772 3.57897 3.72072 3.84028 4.01817 4.05110 4.38717 4.53170 4.63656 4.70124 4.75098 4.78458 4.86316 4.88460 5.16495 5.22339 5.23627 5.29296 5.37054 5.81168 5.82673 6.10513 6.21390 6.83681 7.06665 7.46115 8.43831 8.64312 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.042974 B = 0.004919 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.396949 B = 5690.946387 C = 5827.906606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.135 4.135 3 C -0.073 4.073 4 C -0.162 4.162 5 C 0.098 3.902 6 C 0.189 3.811 7 N -0.746 5.746 8 C 0.538 3.462 9 O -0.631 6.631 10 C -0.573 4.573 11 H 0.086 0.914 12 C 0.029 3.971 13 N -0.821 5.821 14 Si 1.002 2.998 15 H -0.256 1.256 16 H -0.271 1.271 17 H -0.252 1.252 18 N -0.505 5.505 19 C 0.105 3.895 20 C -0.102 4.102 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.171 0.829 25 H 0.144 0.856 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.391 0.609 29 H 0.276 0.724 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.278 2.116 -0.840 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C -0.098 4.098 4 C -0.183 4.183 5 C -0.039 4.039 6 C 0.064 3.936 7 N -0.401 5.401 8 C 0.343 3.657 9 O -0.518 6.518 10 C -0.610 4.610 11 H 0.104 0.896 12 C -0.186 4.186 13 N -0.450 5.450 14 Si 0.820 3.180 15 H -0.180 1.180 16 H -0.196 1.196 17 H -0.176 1.176 18 N -0.216 5.216 19 C -0.034 4.034 20 C -0.159 4.159 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.103 0.897 24 H 0.188 0.812 25 H 0.162 0.838 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.223 0.777 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.084 1.355 -1.620 20.194 hybrid contribution 0.273 0.633 0.603 0.915 sum -19.811 1.988 -1.017 19.936 Atomic orbital electron populations 1.20859 0.87100 1.04609 1.03785 1.21195 0.99572 0.92725 1.00182 1.21870 0.92785 0.99766 0.95419 1.22129 0.96495 0.98239 1.01395 1.20999 0.94822 0.89737 0.98297 1.19613 0.87875 1.00144 0.86002 1.45779 1.07234 1.80515 1.06538 1.18660 0.80176 0.76232 0.90647 1.90548 1.55815 1.57593 1.47845 1.21370 0.93511 1.54321 0.91787 0.89615 1.27010 0.96417 0.91234 1.03976 1.70179 1.03282 1.36125 1.35422 0.85024 0.77312 0.80232 0.75400 1.17976 1.19598 1.17634 1.67264 1.09425 1.31909 1.12974 1.21794 0.88731 0.97345 0.95543 1.20830 0.99698 0.91444 1.03915 0.89563 0.89692 0.89664 0.81206 0.83802 0.94485 0.92163 0.77673 0.91397 0.89315 0.91848 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.21 71.24 0.66 -0.52 16 2 C -0.13 -2.77 5.90 -19.77 -0.12 -2.88 16 3 C -0.07 -1.54 9.86 22.47 0.22 -1.32 16 4 C -0.16 -4.57 9.72 22.36 0.22 -4.35 16 5 C 0.10 3.53 6.15 42.56 0.26 3.79 16 6 C 0.19 8.40 5.98 85.64 0.51 8.91 16 7 N -0.75 -37.25 5.54 -471.11 -2.61 -39.86 16 8 C 0.54 33.14 7.75 86.36 0.67 33.81 16 9 O -0.63 -44.26 15.02 -4.31 -0.06 -44.32 16 10 C -0.57 -33.97 9.54 24.83 0.24 -33.74 16 11 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 12 C 0.03 1.66 5.50 85.30 0.47 2.13 16 13 N -0.82 -51.57 11.83 21.83 0.26 -51.31 16 14 Si 1.00 41.92 29.56 68.60 2.03 43.95 16 15 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 16 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 17 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 18 N -0.51 -17.88 10.19 -172.07 -1.75 -19.63 16 19 C 0.10 2.77 6.78 42.54 0.29 3.05 16 20 C -0.10 -1.93 9.36 71.23 0.67 -1.26 16 21 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.08 0.74 6.72 -2.39 -0.02 0.72 16 23 H 0.08 0.68 8.09 -2.38 -0.02 0.66 16 24 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 25 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 2.67 8.04 -2.39 -0.02 2.65 16 28 H 0.39 17.64 8.44 -92.71 -0.78 16.85 16 29 H 0.28 15.65 8.29 -92.71 -0.77 14.88 16 30 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.29 6.69 -2.39 -0.02 1.28 16 Total: -1.00 -81.72 282.02 2.29 -79.43 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.35 Total: 24.12 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 4.08 Total: 7.63 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -4.11 Total: -110.81 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -0.06 Total: -44.32 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -81.72 2.29 -79.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313951061.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.821 kcal (2) G-P(sol) polarization free energy of solvation -81.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds