Wall clock time and date at job start Sun Mar 29 2020 21:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46505 * 109.47064 * 2 1 4 4 N 1.40053 * 125.85038 * 90.02311 * 3 2 1 5 5 C 1.30476 * 109.50890 * 179.97438 * 4 3 2 6 6 C 1.40729 * 108.33566 * 359.97438 * 5 4 3 7 7 C 1.35893 * 125.84375 * 269.97976 * 3 2 1 8 8 N 1.34211 * 134.19502 * 0.04077 * 7 3 2 9 9 C 1.30089 * 121.88546 * 179.77851 * 8 7 3 10 10 N 1.36076 * 122.98854 * 0.51891 * 9 8 7 11 11 C 1.37195 * 119.88278 * 179.72466 * 10 9 8 12 12 H 1.08004 * 119.99739 * 150.99295 * 11 10 9 13 13 C 1.39042 * 120.00208 * 331.27075 * 11 10 9 14 14 N 1.31273 * 120.00045 * 342.00346 * 13 11 10 15 15 Si 1.86796 * 120.00197 * 161.99740 * 13 11 10 16 16 H 1.48503 * 109.47102 * 60.00160 * 15 13 11 17 17 H 1.48500 * 109.47401 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47264 * 300.00648 * 15 13 11 19 19 C 1.35371 * 120.23448 * 359.45252 * 10 9 8 20 20 O 1.21799 * 121.24164 * 180.25259 * 19 10 9 21 21 H 1.08996 * 109.46968 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46928 * 300.00088 * 1 2 3 23 23 H 1.08999 * 109.46425 * 60.00088 * 1 2 3 24 24 H 1.08991 * 109.47186 * 239.99806 * 2 1 3 25 25 H 1.09005 * 109.46401 * 119.99499 * 2 1 3 26 26 H 1.07998 * 125.82903 * 179.97438 * 5 4 3 27 27 H 1.07999 * 118.50779 * 180.25143 * 9 8 7 28 28 H 0.96996 * 120.00194 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2923 2.1545 1.1352 5 6 2.7100 3.3348 0.7681 6 6 2.7267 3.3808 -0.6383 7 6 2.2840 2.1314 -1.1016 8 7 2.2065 1.9126 -2.4235 9 6 2.5259 2.8275 -3.2913 10 7 2.9697 4.0636 -2.9354 11 6 3.2944 4.9786 -3.9047 12 1 3.1917 6.0352 -3.7061 13 6 3.7504 4.5455 -5.1448 14 7 4.2053 3.3223 -5.2863 15 14 3.7154 5.7042 -6.6096 16 1 4.5501 6.8971 -6.3171 17 1 4.2509 5.0061 -7.8059 18 1 2.3170 6.1305 -6.8703 19 6 3.0866 4.3956 -1.6282 20 8 3.4775 5.4982 -1.2891 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.9943 4.1390 1.4305 27 1 2.4390 2.5939 -4.3422 28 1 4.5230 3.0200 -6.1515 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331347603.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:12 Heat of formation + Delta-G solvation = 64.105726 kcal Electronic energy + Delta-G solvation = -16165.348807 eV Core-core repulsion = 13411.301474 eV Total energy + Delta-G solvation = -2754.047333 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.03183 -38.99199 -36.21249 -34.26648 -33.93506 -31.80907 -29.21753 -28.68205 -25.89922 -23.69532 -23.19595 -22.08730 -19.78839 -18.72938 -17.64185 -16.76105 -15.78894 -15.12073 -14.99690 -14.25736 -14.21558 -13.88330 -13.45547 -13.18997 -12.88611 -12.24889 -12.12407 -11.86099 -11.66147 -11.39857 -11.16375 -11.06073 -10.69862 -10.39725 -9.88121 -9.07179 -9.04843 -8.87569 -8.30900 -7.39847 -6.96814 -4.63897 1.77446 2.68443 2.80016 2.99499 3.00413 3.03370 3.35549 3.69460 4.24756 4.35109 4.81473 4.96835 5.10055 5.28732 5.34510 5.46628 5.69340 5.82038 5.87323 6.14621 6.19343 6.24981 6.61150 6.99988 7.09250 7.34240 7.55295 7.91431 8.18808 8.29946 8.57986 9.08753 9.27308 10.04687 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.039542 B = 0.007884 C = 0.006866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.944939 B = 3550.564215 C = 4076.968969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.380 5.380 4 N -0.303 5.303 5 C 0.123 3.877 6 C -0.370 4.370 7 C 0.346 3.654 8 N -0.586 5.586 9 C 0.404 3.596 10 N -0.358 5.358 11 C -0.343 4.343 12 H 0.119 0.881 13 C 0.047 3.953 14 N -0.852 5.852 15 Si 0.945 3.055 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.263 1.263 19 C 0.538 3.462 20 O -0.551 6.551 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.184 0.816 27 H 0.208 0.792 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.727 -5.131 1.692 7.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.020 3.980 3 N -0.169 5.169 4 N -0.121 5.121 5 C -0.068 4.068 6 C -0.387 4.387 7 C 0.107 3.893 8 N -0.319 5.319 9 C 0.121 3.879 10 N -0.059 5.059 11 C -0.471 4.471 12 H 0.136 0.864 13 C -0.163 4.163 14 N -0.484 5.484 15 Si 0.768 3.232 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.188 1.188 19 C 0.335 3.665 20 O -0.430 6.430 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.201 0.799 27 H 0.224 0.776 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.930 -6.165 2.623 8.318 hybrid contribution 0.667 1.501 -1.089 1.970 sum -4.263 -4.664 1.534 6.503 Atomic orbital electron populations 1.22166 0.95101 1.02272 1.02984 1.21477 0.94687 0.78143 1.03662 1.48037 1.56052 1.11830 1.01002 1.76972 1.24020 1.04297 1.06788 1.23253 0.95628 0.94693 0.93206 1.21104 1.24932 0.97543 0.95109 1.19191 0.93113 0.88786 0.88204 1.67319 1.33402 1.32827 0.98368 1.24812 0.84033 0.79840 0.99233 1.42701 1.43578 1.12757 1.06892 1.20057 1.45365 0.90973 0.90687 0.86379 1.25664 0.92857 0.97625 1.00109 1.69747 1.34054 1.17950 1.26694 0.85686 0.79691 0.79560 0.78233 1.18946 1.20114 1.18776 1.17700 0.79713 0.87464 0.81662 1.90684 1.48805 1.23385 1.80104 0.91114 0.92181 0.91848 0.88958 0.89587 0.79920 0.77644 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 15 2 C 0.14 2.08 7.16 -4.03 -0.03 2.05 15 3 N -0.38 -7.47 3.63 -60.44 -0.22 -7.69 15 4 N -0.30 -6.03 12.47 30.75 0.38 -5.65 15 5 C 0.12 2.55 12.04 -17.19 -0.21 2.34 15 6 C -0.37 -8.84 6.38 -104.91 -0.67 -9.51 15 7 C 0.35 7.81 8.03 -155.90 -1.25 6.55 15 8 N -0.59 -13.22 10.37 -13.35 -0.14 -13.36 15 9 C 0.40 9.47 10.25 -89.76 -0.92 8.55 15 10 N -0.36 -9.17 2.76 -64.01 -0.18 -9.35 15 11 C -0.34 -8.70 9.13 -14.85 -0.14 -8.83 15 12 H 0.12 3.04 7.61 -52.48 -0.40 2.65 15 13 C 0.05 1.09 4.97 -17.49 -0.09 1.01 15 14 N -0.85 -20.16 11.20 55.50 0.62 -19.53 15 15 Si 0.94 17.78 29.59 -169.99 -5.03 12.75 15 16 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 17 H -0.28 -5.05 7.11 56.52 0.40 -4.64 15 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 19 C 0.54 14.22 7.61 -12.77 -0.10 14.12 15 20 O -0.55 -15.63 17.04 5.10 0.09 -15.55 15 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.09 1.31 8.14 -51.93 -0.42 0.88 15 25 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.18 3.20 8.06 -52.49 -0.42 2.78 15 27 H 0.21 4.60 6.13 -52.49 -0.32 4.28 15 28 H 0.29 6.26 8.31 -40.82 -0.34 5.92 15 LS Contribution 255.01 15.07 3.84 3.84 Total: -1.00 -29.41 255.01 -6.04 -35.45 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -2.39 Total: 4.53 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: -3.02 Total: 14.55 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.47 Total: -55.58 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.41 -6.04 -35.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331347603.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.558 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds