Wall clock time and date at job start Sun Mar 29 2020 21:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46505 * 109.47064 * 2 1 4 4 N 1.40053 * 125.85038 * 90.02311 * 3 2 1 5 5 C 1.30476 * 109.50890 * 179.97438 * 4 3 2 6 6 C 1.40729 * 108.33566 * 359.97438 * 5 4 3 7 7 C 1.35893 * 125.84375 * 269.97976 * 3 2 1 8 8 N 1.34211 * 134.19502 * 0.04077 * 7 3 2 9 9 C 1.30089 * 121.88546 * 179.77851 * 8 7 3 10 10 N 1.36076 * 122.98854 * 0.51891 * 9 8 7 11 11 C 1.37195 * 119.88278 * 179.72466 * 10 9 8 12 12 H 1.08004 * 119.99739 * 150.99295 * 11 10 9 13 13 C 1.39042 * 120.00208 * 331.27075 * 11 10 9 14 14 N 1.31273 * 120.00045 * 342.00346 * 13 11 10 15 15 Si 1.86796 * 120.00197 * 161.99740 * 13 11 10 16 16 H 1.48503 * 109.47102 * 60.00160 * 15 13 11 17 17 H 1.48500 * 109.47401 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47264 * 300.00648 * 15 13 11 19 19 C 1.35371 * 120.23448 * 359.45252 * 10 9 8 20 20 O 1.21799 * 121.24164 * 180.25259 * 19 10 9 21 21 H 1.08996 * 109.46968 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46928 * 300.00088 * 1 2 3 23 23 H 1.08999 * 109.46425 * 60.00088 * 1 2 3 24 24 H 1.08991 * 109.47186 * 239.99806 * 2 1 3 25 25 H 1.09005 * 109.46401 * 119.99499 * 2 1 3 26 26 H 1.07998 * 125.82903 * 179.97438 * 5 4 3 27 27 H 1.07999 * 118.50779 * 180.25143 * 9 8 7 28 28 H 0.96996 * 120.00194 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2923 2.1545 1.1352 5 6 2.7100 3.3348 0.7681 6 6 2.7267 3.3808 -0.6383 7 6 2.2840 2.1314 -1.1016 8 7 2.2065 1.9126 -2.4235 9 6 2.5259 2.8275 -3.2913 10 7 2.9697 4.0636 -2.9354 11 6 3.2944 4.9786 -3.9047 12 1 3.1917 6.0352 -3.7061 13 6 3.7504 4.5455 -5.1448 14 7 4.2053 3.3223 -5.2863 15 14 3.7154 5.7042 -6.6096 16 1 4.5501 6.8971 -6.3171 17 1 4.2509 5.0061 -7.8059 18 1 2.3170 6.1305 -6.8703 19 6 3.0866 4.3956 -1.6282 20 8 3.4775 5.4982 -1.2891 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.9943 4.1390 1.4305 27 1 2.4390 2.5939 -4.3422 28 1 4.5230 3.0200 -6.1515 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331347603.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:12 Heat of formation + Delta-G solvation = 46.642948 kcal Electronic energy + Delta-G solvation = -16166.106050 eV Core-core repulsion = 13411.301474 eV Total energy + Delta-G solvation = -2754.804576 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.80347 -40.78457 -38.17364 -36.04882 -35.32173 -33.66897 -30.64799 -30.48269 -27.73444 -25.36036 -24.73593 -23.81350 -21.44528 -20.50194 -19.35986 -18.58261 -17.62111 -16.92204 -16.64143 -15.84651 -15.66525 -15.61116 -15.16836 -14.79650 -14.55623 -13.90507 -13.58963 -13.43655 -13.10609 -12.96606 -12.77645 -12.38859 -12.13661 -11.94420 -11.64124 -11.04506 -10.85627 -10.68984 -9.95853 -9.23366 -8.75791 -6.55348 -0.01083 0.84096 1.25605 1.43863 1.49152 1.57972 1.59640 2.07605 2.46105 2.54027 3.08953 3.25789 3.47410 3.89839 4.04931 4.16006 4.31898 4.39790 4.46946 4.72806 4.89015 4.90426 5.15693 5.21735 5.42083 5.51682 5.85999 6.05388 6.38841 6.54958 6.70876 7.22789 7.34189 8.28093 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.039542 B = 0.007884 C = 0.006866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.944939 B = 3550.564215 C = 4076.968969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 N -0.371 5.371 4 N -0.288 5.288 5 C 0.120 3.880 6 C -0.392 4.392 7 C 0.331 3.669 8 N -0.574 5.574 9 C 0.402 3.598 10 N -0.366 5.366 11 C -0.384 4.384 12 H 0.102 0.898 13 C 0.024 3.976 14 N -0.871 5.871 15 Si 1.014 2.986 16 H -0.271 1.271 17 H -0.260 1.260 18 H -0.254 1.254 19 C 0.515 3.485 20 O -0.589 6.589 21 H 0.108 0.892 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.210 0.790 27 H 0.216 0.784 28 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 -6.554 1.370 8.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.008 3.992 3 N -0.160 5.160 4 N -0.106 5.106 5 C -0.072 4.072 6 C -0.409 4.409 7 C 0.091 3.909 8 N -0.307 5.307 9 C 0.119 3.881 10 N -0.068 5.068 11 C -0.511 4.511 12 H 0.120 0.880 13 C -0.184 4.184 14 N -0.503 5.503 15 Si 0.833 3.167 16 H -0.196 1.196 17 H -0.184 1.184 18 H -0.178 1.178 19 C 0.314 3.686 20 O -0.472 6.472 21 H 0.127 0.873 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.117 0.883 25 H 0.131 0.869 26 H 0.226 0.774 27 H 0.232 0.768 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.506 -7.676 2.328 9.730 hybrid contribution 0.818 1.781 -0.909 2.160 sum -4.688 -5.895 1.419 7.665 Atomic orbital electron populations 1.22112 0.93307 1.04408 1.01761 1.22000 0.96144 0.75636 1.05374 1.48544 1.54637 1.13028 0.99780 1.76952 1.22874 1.03948 1.06861 1.23642 0.95617 0.95615 0.92291 1.21324 1.25641 0.97581 0.96305 1.19351 0.93668 0.89227 0.88659 1.67337 1.32534 1.32260 0.98525 1.25017 0.84020 0.79328 0.99776 1.42811 1.43826 1.13383 1.06748 1.20170 1.48313 0.90620 0.91984 0.88041 1.26520 0.91176 0.99207 1.01535 1.69765 1.33410 1.19150 1.27970 0.84700 0.79993 0.77151 0.74834 1.19618 1.18416 1.17772 1.18198 0.80076 0.87767 0.82564 1.90624 1.51057 1.24798 1.80726 0.87303 0.92607 0.93772 0.88270 0.86892 0.77380 0.76827 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 10.24 71.99 0.74 -2.81 15 2 C 0.13 3.38 7.16 86.38 0.62 4.00 15 3 N -0.37 -13.92 3.63 -345.15 -1.25 -15.17 15 4 N -0.29 -10.97 12.47 -56.64 -0.71 -11.68 15 5 C 0.12 4.86 12.04 85.50 1.03 5.89 15 6 C -0.39 -18.88 6.38 -20.05 -0.13 -19.01 15 7 C 0.33 14.76 8.03 133.86 1.07 15.83 15 8 N -0.57 -25.76 10.37 -196.14 -2.03 -27.79 15 9 C 0.40 19.05 10.25 180.05 1.85 20.89 15 10 N -0.37 -19.30 2.76 -474.26 -1.31 -20.61 15 11 C -0.38 -20.04 9.13 84.05 0.77 -19.28 15 12 H 0.10 5.50 7.61 -2.91 -0.02 5.47 15 13 C 0.02 1.10 4.97 84.97 0.42 1.52 15 14 N -0.87 -40.75 11.20 21.67 0.24 -40.51 15 15 Si 1.01 35.75 29.59 68.60 2.03 37.78 15 16 H -0.27 -9.83 7.11 99.48 0.71 -9.12 15 17 H -0.26 -8.46 7.11 99.48 0.71 -7.75 15 18 H -0.25 -8.54 7.11 99.48 0.71 -7.84 15 19 C 0.52 28.18 7.61 86.24 0.66 28.84 15 20 O -0.59 -34.92 17.04 -4.67 -0.08 -35.00 15 21 H 0.11 1.64 8.14 -2.39 -0.02 1.62 15 22 H 0.05 1.31 8.14 -2.39 -0.02 1.29 15 23 H 0.04 1.17 8.14 -2.39 -0.02 1.15 15 24 H 0.10 2.53 8.14 -2.39 -0.02 2.51 15 25 H 0.11 2.43 8.14 -2.38 -0.02 2.41 15 26 H 0.21 7.10 8.06 -2.91 -0.02 7.08 15 27 H 0.22 9.61 6.13 -2.91 -0.02 9.59 15 28 H 0.30 12.60 8.31 -92.71 -0.77 11.83 15 Total: -1.00 -63.96 255.01 5.11 -58.85 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 1.19 Total: 18.25 kcal Atomic # 6 Polarization: 28.85 SS G_CDS: 7.02 Total: 35.87 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -5.06 Total: -115.77 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.08 Total: -35.00 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Total: -63.96 5.11 -58.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331347603.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.498 kcal (2) G-P(sol) polarization free energy of solvation -63.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds