Wall clock time and date at job start Sun Mar 29 2020 21:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39656 * 120.13512 * 119.90749 * 3 2 1 5 5 C 1.37940 * 119.89674 * 179.72083 * 4 3 2 6 6 C 1.38346 * 120.17694 * 0.51055 * 5 4 3 7 7 C 1.50703 * 119.85735 * 179.76458 * 6 5 4 8 8 N 1.46899 * 109.47107 * 259.72052 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.46800 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00575 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99722 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99924 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00036 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47405 * 59.99892 * 14 12 10 16 16 H 1.48506 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47090 * 299.99898 * 14 12 10 18 18 C 1.38555 * 120.28130 * 359.48733 * 6 5 4 19 19 F 1.35104 * 119.94898 * 180.28112 * 18 6 5 20 20 C 1.38194 * 120.09652 * 0.25328 * 18 6 5 21 21 H 1.07997 * 120.05163 * 359.97206 * 4 3 2 22 22 H 1.08000 * 119.91271 * 180.24923 * 5 4 3 23 23 H 1.09002 * 109.47152 * 139.72140 * 7 6 5 24 24 H 1.09001 * 109.46980 * 19.72240 * 7 6 5 25 25 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 26 26 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 27 27 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 28 28 H 0.96998 * 120.00185 * 179.97438 * 13 12 10 29 29 H 1.08004 * 120.09015 * 179.97438 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.6032 -1.0470 5 6 4.6482 0.6060 -1.0391 6 6 5.3390 0.0044 -0.0023 7 6 6.8460 0.0070 -0.0037 8 7 7.3375 -1.2945 -0.4751 9 6 8.8061 -1.3286 -0.4903 10 6 9.2722 -2.6758 -0.9789 11 1 8.5498 -3.4311 -1.2513 12 6 10.6210 -2.9443 -1.0782 13 7 11.5006 -2.0244 -0.7470 14 14 11.1988 -4.6140 -1.6844 15 1 10.6846 -4.8471 -3.0579 16 1 12.6834 -4.6484 -1.6997 17 1 10.6879 -5.6736 -0.7782 18 6 4.6511 -0.5955 1.0401 19 9 5.3325 -1.1761 2.0521 20 6 3.2692 -0.6004 1.0466 21 1 2.7317 1.0697 -1.8594 22 1 5.1905 1.0754 -1.8466 23 1 7.2099 0.1882 1.0077 24 1 7.2073 0.7936 -0.6662 25 1 6.9639 -2.0465 0.0844 26 1 9.1807 -0.5514 -1.1564 27 1 9.1839 -1.1565 0.5175 28 1 12.4495 -2.2133 -0.8164 29 1 2.7331 -1.0684 1.8590 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336735844.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:15 Heat of formation + Delta-G solvation = -15.559088 kcal Electronic energy + Delta-G solvation = -14957.317062 eV Core-core repulsion = 12179.895241 eV Total energy + Delta-G solvation = -2777.421820 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.94462 -40.41914 -37.83988 -36.88561 -34.71480 -32.68938 -31.66317 -29.13138 -26.56233 -23.97087 -23.74490 -22.81984 -20.30291 -18.66119 -17.79597 -17.08109 -16.95442 -16.68245 -16.44347 -15.94034 -15.15071 -14.98007 -14.92977 -14.71758 -14.52409 -14.05978 -13.75816 -13.40011 -13.09786 -13.06764 -12.78979 -12.60596 -12.45325 -12.19568 -11.91837 -11.32234 -10.64277 -10.04639 -9.76553 -9.15733 -8.20841 -6.31639 -0.41458 0.15956 1.43779 1.46718 1.53268 1.54714 1.78241 2.41996 2.63465 2.72134 3.12738 3.33205 3.56172 3.72811 3.87579 3.96399 4.18264 4.53279 4.59853 4.73672 4.89053 5.03747 5.08958 5.18556 5.28325 5.37209 5.61283 5.72300 6.01653 6.36096 6.38662 6.65340 6.87177 7.38814 8.90200 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.044824 B = 0.004551 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.512447 B = 6151.419154 C = 6171.576290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.285 3.715 3 C -0.009 4.009 4 C -0.059 4.059 5 C -0.072 4.072 6 C -0.082 4.082 7 C 0.089 3.911 8 N -0.679 5.679 9 C 0.208 3.792 10 C -0.537 4.537 11 H 0.064 0.936 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.972 3.028 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.084 3.916 19 F -0.146 7.146 20 C -0.097 4.097 21 H 0.171 0.829 22 H 0.164 0.836 23 H 0.028 0.972 24 H 0.092 0.908 25 H 0.332 0.668 26 H 0.010 0.990 27 H -0.039 1.039 28 H 0.265 0.735 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 5.748 0.942 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.030 4.030 3 C -0.013 4.013 4 C -0.080 4.080 5 C -0.090 4.090 6 C -0.084 4.084 7 C -0.040 4.040 8 N -0.309 5.309 9 C 0.080 3.920 10 C -0.575 4.575 11 H 0.082 0.918 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.796 3.204 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.194 1.194 18 C 0.064 3.936 19 F -0.124 7.124 20 C -0.118 4.118 21 H 0.188 0.812 22 H 0.181 0.819 23 H 0.046 0.954 24 H 0.110 0.890 25 H 0.149 0.851 26 H 0.028 0.972 27 H -0.021 1.021 28 H 0.074 0.926 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.305 5.938 0.329 17.356 hybrid contribution 1.529 -0.912 1.171 2.131 sum -14.776 5.027 1.500 15.679 Atomic orbital electron populations 1.81301 1.13011 1.09729 1.08825 1.25518 0.92276 0.92565 0.92638 1.15624 0.83661 1.04270 0.97700 1.21510 0.93558 0.95942 0.96941 1.21128 0.93641 0.97358 0.96884 1.20252 0.95779 0.97836 0.94503 1.20927 0.90080 0.94020 0.98998 1.60693 1.09786 1.03278 1.57150 1.19238 0.82994 0.96544 0.93183 1.21500 0.92129 0.99734 1.44151 0.91817 1.25924 0.96844 1.01363 0.95499 1.70070 1.01960 1.35813 1.49353 0.85403 0.76869 0.78986 0.79143 1.19226 1.20824 1.19358 1.17494 0.90041 0.98964 0.87066 1.91510 1.80233 1.82332 1.58359 1.21103 0.91360 0.99745 0.99640 0.81159 0.81860 0.95403 0.89014 0.85147 0.97217 1.02097 0.92604 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.74 18.54 19.00 0.35 -10.38 15 2 C 0.28 5.38 15.33 88.33 1.35 6.74 15 3 C -0.01 -0.14 5.73 -21.37 -0.12 -0.27 15 4 C -0.06 -0.82 9.75 22.54 0.22 -0.60 15 5 C -0.07 -1.26 9.65 22.22 0.21 -1.05 15 6 C -0.08 -2.00 5.41 -19.76 -0.11 -2.11 15 7 C 0.09 2.84 5.53 85.56 0.47 3.32 15 8 N -0.68 -27.92 6.48 -521.98 -3.38 -31.30 15 9 C 0.21 10.82 5.44 85.55 0.47 11.28 15 10 C -0.54 -30.12 9.32 25.60 0.24 -29.88 15 11 H 0.06 3.47 7.81 -2.91 -0.02 3.45 15 12 C 0.00 0.12 5.46 84.66 0.46 0.58 15 13 N -0.93 -55.39 13.29 21.45 0.28 -55.10 15 14 Si 0.97 43.67 29.54 68.60 2.03 45.70 15 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 17 H -0.27 -11.64 7.11 99.48 0.71 -10.94 15 18 C 0.08 2.02 7.23 22.34 0.16 2.18 15 19 F -0.15 -4.19 16.64 44.97 0.75 -3.44 15 20 C -0.10 -1.79 9.73 22.58 0.22 -1.57 15 21 H 0.17 1.32 8.06 -2.91 -0.02 1.30 15 22 H 0.16 2.32 8.03 -2.91 -0.02 2.30 15 23 H 0.03 0.95 7.94 -2.39 -0.02 0.93 15 24 H 0.09 2.75 7.99 -2.39 -0.02 2.74 15 25 H 0.33 13.55 8.71 -89.69 -0.78 12.77 15 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 15 27 H -0.04 -2.18 8.14 -2.39 -0.02 -2.20 15 28 H 0.27 14.83 8.31 -92.71 -0.77 14.06 15 29 H 0.16 2.35 8.06 -2.91 -0.02 2.33 15 Total: -1.00 -65.24 275.56 4.01 -61.23 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: 0.40 Total: 4.67 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 3.58 Total: -11.37 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -2.74 Total: -96.79 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.75 Total: -3.44 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -65.24 4.01 -61.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336735844.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.667 kcal (2) G-P(sol) polarization free energy of solvation -65.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds