Wall clock time and date at job start Sun Mar 29 2020 21:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34707 * 117.00722 * 2 1 4 4 O 1.21475 * 119.99553 * 359.97438 * 3 2 1 5 5 C 1.47725 * 120.00497 * 180.02562 * 3 2 1 6 6 C 1.39653 * 120.14725 * 6.26283 * 5 3 2 7 7 C 1.37916 * 119.84795 * 180.24807 * 6 5 3 8 8 C 1.50701 * 119.92871 * 179.73216 * 7 6 5 9 9 C 1.50692 * 109.47200 * 269.73129 * 8 7 6 10 10 H 1.08008 * 120.00353 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00476 * 179.71961 * 9 8 7 12 12 N 1.31513 * 119.99567 * 0.27824 * 11 9 8 13 13 Si 1.86793 * 120.00597 * 180.27300 * 11 9 8 14 14 H 1.48506 * 109.46896 * 60.00001 * 13 11 9 15 15 H 1.48494 * 109.47569 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47298 * 300.00423 * 13 11 9 17 17 C 1.38394 * 120.14711 * 359.46276 * 7 6 5 18 18 C 1.38335 * 120.30626 * 0.26775 * 17 7 6 19 19 C 1.37971 * 120.15061 * 0.02562 * 18 17 7 20 20 C 1.50697 * 120.08128 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.46526 * 300.00232 * 1 2 3 22 22 H 1.08996 * 109.47031 * 59.99589 * 1 2 3 23 23 H 1.08997 * 109.47236 * 180.02562 * 1 2 3 24 24 H 1.08006 * 120.07696 * 359.97438 * 6 5 3 25 25 H 1.08999 * 109.47179 * 149.72880 * 8 7 6 26 26 H 1.09003 * 109.46704 * 29.73247 * 8 7 6 27 27 H 0.96996 * 120.00341 * 179.97438 * 12 11 9 28 28 H 1.08000 * 119.84683 * 180.29553 * 17 7 6 29 29 H 1.08004 * 119.92986 * 180.02562 * 18 17 7 30 30 H 1.08996 * 109.47365 * 96.52078 * 20 19 18 31 31 H 1.09001 * 109.47582 * 216.52448 * 20 19 18 32 32 H 1.09007 * 109.46682 * 336.52169 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4022 2.2190 -0.0005 5 6 3.5390 1.2774 -0.0006 6 6 4.3021 0.1154 -0.1329 7 6 5.6790 0.1941 -0.1275 8 6 6.5043 -1.0595 -0.2640 9 6 6.7881 -1.6255 1.1034 10 1 6.4092 -1.1271 1.9836 11 6 7.5271 -2.7825 1.2310 12 7 7.9890 -3.3891 0.1594 13 14 7.8725 -3.4883 2.9256 14 1 6.5884 -3.8066 3.6003 15 1 8.6816 -4.7262 2.7909 16 1 8.6224 -2.4928 3.7331 17 6 6.3045 1.4222 -0.0025 18 6 5.5547 2.5779 0.1233 19 6 4.1765 2.5130 0.1255 20 6 3.3612 3.7730 0.2620 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 3.8152 -0.8433 -0.2347 25 1 7.4448 -0.8229 -0.7617 26 1 5.9554 -1.7933 -0.8543 27 1 8.5092 -4.2029 0.2490 28 1 7.3830 1.4788 -0.0037 29 1 6.0491 3.5332 0.2200 30 1 3.0599 4.1197 -0.7264 31 1 2.4740 3.5686 0.8614 32 1 3.9600 4.5421 0.7499 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396026646.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:57 Heat of formation + Delta-G solvation = -90.410002 kcal Electronic energy + Delta-G solvation = -15841.421113 eV Core-core repulsion = 13151.921068 eV Total energy + Delta-G solvation = -2689.500046 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.70575 -39.94458 -37.58504 -35.66462 -33.87780 -32.46331 -30.49164 -28.65093 -27.24013 -24.96227 -24.39470 -22.68445 -21.13582 -18.72037 -18.47669 -17.72225 -17.40868 -16.65841 -16.34135 -16.24470 -15.28858 -14.92294 -14.43820 -14.39278 -13.99902 -13.88209 -13.55313 -13.10477 -13.00043 -12.94859 -12.67653 -12.64418 -12.40268 -12.26754 -11.78628 -11.52521 -11.48152 -11.06282 -10.59167 -9.95004 -9.38721 -8.19659 -6.32572 -0.24892 0.48859 1.41207 1.43349 1.50812 1.53397 1.74861 2.40523 2.86166 3.11793 3.70953 3.92519 3.97172 4.21434 4.29167 4.33996 4.40501 4.54971 4.68402 4.79328 4.84869 4.86483 4.99649 5.18917 5.25289 5.34575 5.38955 5.42095 5.60951 5.74550 5.94011 5.99295 6.18920 6.68980 6.79684 7.36093 8.89605 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.006628 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.920249 B = 4223.405689 C = 4846.511421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.513 3.487 4 O -0.518 6.518 5 C -0.149 4.149 6 C -0.069 4.069 7 C -0.082 4.082 8 C 0.058 3.942 9 C -0.531 4.531 10 H 0.055 0.945 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.962 3.038 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.267 1.267 17 C -0.084 4.084 18 C -0.124 4.124 19 C -0.044 4.044 20 C -0.110 4.110 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.128 0.872 24 H 0.123 0.877 25 H 0.012 0.988 26 H 0.005 0.995 27 H 0.266 0.734 28 H 0.133 0.867 29 H 0.164 0.836 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.368 10.405 0.301 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.283 6.283 3 C 0.361 3.639 4 O -0.410 6.410 5 C -0.150 4.150 6 C -0.088 4.088 7 C -0.082 4.082 8 C 0.021 3.979 9 C -0.569 4.569 10 H 0.073 0.927 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.786 3.214 14 H -0.195 1.195 15 H -0.206 1.206 16 H -0.191 1.191 17 C -0.102 4.102 18 C -0.141 4.141 19 C -0.045 4.045 20 C -0.166 4.166 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.146 0.854 24 H 0.141 0.859 25 H 0.030 0.970 26 H 0.023 0.977 27 H 0.075 0.925 28 H 0.151 0.849 29 H 0.181 0.819 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.514 10.527 0.240 14.881 hybrid contribution 0.192 -0.952 0.537 1.109 sum -10.322 9.576 0.776 14.101 Atomic orbital electron populations 1.23586 0.74159 1.05710 1.02891 1.86605 1.25515 1.32311 1.83870 1.21243 0.89096 0.81433 0.72177 1.90725 1.67258 1.35677 1.47350 1.19066 0.88965 0.95039 1.11973 1.21259 0.93459 0.97540 0.96520 1.20380 0.93880 0.96523 0.97416 1.18097 0.93601 0.89828 0.96384 1.21357 1.33481 1.09258 0.92779 0.92691 1.25875 0.95359 0.97077 1.00792 1.70059 1.36787 1.19462 1.30544 0.85546 0.78481 0.77836 0.79499 1.19507 1.20584 1.19144 1.21528 1.01006 0.91698 0.96006 1.21262 0.92181 0.99259 1.01407 1.20216 0.94563 0.94033 0.95673 1.21006 0.99477 0.92897 1.03171 0.91471 0.91353 0.85393 0.85911 0.96988 0.97679 0.92527 0.84922 0.81865 0.90540 0.90625 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.57 113.37 1.20 1.81 16 2 O -0.37 -11.27 9.84 -56.17 -0.55 -11.83 16 3 C 0.51 17.09 7.83 70.33 0.55 17.64 16 4 O -0.52 -17.19 13.13 19.92 0.26 -16.93 16 5 C -0.15 -5.28 5.87 -20.10 -0.12 -5.40 16 6 C -0.07 -2.78 9.26 22.54 0.21 -2.57 16 7 C -0.08 -3.52 5.06 -19.90 -0.10 -3.62 16 8 C 0.06 3.02 5.10 29.10 0.15 3.16 16 9 C -0.53 -29.76 9.09 25.60 0.23 -29.53 16 10 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 11 C 0.01 0.42 5.46 84.66 0.46 0.88 16 12 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 13 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 C -0.08 -3.04 9.69 22.33 0.22 -2.82 16 18 C -0.12 -3.62 9.66 22.23 0.21 -3.41 16 19 C -0.04 -1.38 5.91 -19.60 -0.12 -1.49 16 20 C -0.11 -2.74 8.74 71.24 0.62 -2.11 16 21 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.12 5.02 7.63 -2.91 -0.02 5.00 16 25 H 0.01 0.65 8.08 -2.39 -0.02 0.63 16 26 H 0.00 0.27 8.08 -2.39 -0.02 0.25 16 27 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 2.10 5.85 -2.39 -0.01 2.09 16 32 H 0.08 1.64 8.04 -2.38 -0.02 1.62 16 Total: -1.00 -64.98 281.77 6.65 -58.33 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.11 Total: 7.05 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 3.52 Total: -27.47 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.28 Total: -54.86 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.29 Total: -28.76 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -64.98 6.65 -58.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396026646.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.077 kcal (2) G-P(sol) polarization free energy of solvation -64.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds