Wall clock time and date at job start Sun Mar 29 2020 22:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47214 * 2 1 4 4 C 1.38603 * 119.54954 * 124.99851 * 3 2 1 5 5 C 1.38587 * 119.34759 * 180.02562 * 4 3 2 6 6 C 1.38630 * 118.48820 * 0.28013 * 5 4 3 7 7 C 1.39274 * 119.06365 * 359.47638 * 6 5 4 8 8 C 1.48159 * 119.72373 * 180.23366 * 7 6 5 9 9 O 1.21512 * 120.00111 * 0.29790 * 8 7 6 10 10 N 1.34780 * 120.00149 * 180.29620 * 8 7 6 11 11 C 1.46496 * 120.00047 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46945 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99682 * 359.97438 * 12 11 10 14 14 C 1.37869 * 119.99976 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00256 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 120.00067 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46753 * 89.99737 * 16 14 12 18 18 H 1.48498 * 109.47218 * 209.99483 * 16 14 12 19 19 H 1.48488 * 109.47179 * 329.99908 * 16 14 12 20 20 N 1.31492 * 119.54668 * 305.02227 * 3 2 1 21 21 H 1.08995 * 109.47401 * 60.00185 * 1 2 3 22 22 H 1.09005 * 109.47041 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46975 * 299.99987 * 1 2 3 24 24 H 1.09000 * 109.47427 * 239.99979 * 2 1 3 25 25 H 1.09004 * 109.46815 * 119.99843 * 2 1 3 26 26 H 1.08000 * 120.32317 * 0.02562 * 4 3 2 27 27 H 1.08002 * 120.75096 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.46712 * 179.70209 * 6 5 4 29 29 H 0.97001 * 119.99600 * 0.02562 * 10 8 7 30 30 H 1.09000 * 109.47213 * 299.99985 * 11 10 8 31 31 H 1.09000 * 109.47442 * 60.00577 * 11 10 8 32 32 H 0.97003 * 120.00346 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9122 1.8348 0.9877 5 6 3.3712 3.1425 0.9840 6 6 2.9250 3.9970 -0.0123 7 6 2.0446 3.5113 -0.9760 8 6 1.5626 4.4105 -2.0504 9 8 1.9397 5.5649 -2.0913 10 7 0.7059 3.9480 -2.9824 11 6 0.2289 4.8373 -4.0444 12 6 -0.7110 4.0814 -4.9480 13 1 -0.9306 3.0424 -4.7511 14 6 -1.2896 4.7159 -6.0266 15 7 -1.0218 5.9809 -6.2667 16 14 -2.4540 3.7788 -7.1472 17 1 -3.8433 3.9119 -6.6399 18 1 -2.3735 4.3354 -8.5216 19 1 -2.0710 2.3444 -7.1708 20 7 1.6296 2.2510 -0.9368 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.2370 1.1450 1.7527 27 1 4.0569 3.4892 1.7430 28 1 3.2584 5.0238 -0.0428 29 1 0.4046 3.0266 -2.9495 30 1 -0.2959 5.6836 -3.6012 31 1 1.0781 5.1993 -4.6240 32 1 -1.4292 6.4275 -7.0254 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451241085.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:10 Heat of formation + Delta-G solvation = -41.867489 kcal Electronic energy + Delta-G solvation = -15619.570610 eV Core-core repulsion = 12964.468277 eV Total energy + Delta-G solvation = -2655.102333 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.64259 -39.98691 -36.28498 -35.10048 -34.50737 -33.39146 -30.97196 -29.41501 -26.17700 -25.34867 -24.16778 -22.24753 -21.63473 -19.59584 -18.04574 -17.56968 -17.01118 -16.59273 -16.43434 -16.21257 -15.61777 -15.19975 -14.77190 -14.56122 -14.19990 -14.02395 -13.84940 -13.20537 -12.96778 -12.84989 -12.72854 -12.35878 -12.24480 -11.93298 -11.53632 -11.28225 -10.89960 -10.83479 -10.43707 -10.10878 -9.82386 -8.31749 -6.48872 -0.33711 0.26643 1.41438 1.44551 1.56084 1.74982 2.23741 2.44186 2.85199 3.02863 3.10555 3.68786 3.89803 4.03867 4.11428 4.41130 4.45216 4.52027 4.58589 4.91332 4.98746 5.08255 5.10538 5.15649 5.16668 5.26899 5.40581 5.46934 5.60679 5.68835 5.79158 6.58864 6.64553 6.94273 7.16759 7.31815 8.80638 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.005978 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.666780 B = 4683.078328 C = 5587.220530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C 0.112 3.888 4 C -0.135 4.135 5 C -0.070 4.070 6 C -0.130 4.130 7 C 0.062 3.938 8 C 0.546 3.454 9 O -0.590 6.590 10 N -0.687 5.687 11 C 0.263 3.737 12 C -0.559 4.559 13 H 0.079 0.921 14 C 0.007 3.993 15 N -0.929 5.929 16 Si 0.987 3.013 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.258 1.258 20 N -0.478 5.478 21 H 0.039 0.961 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.084 0.916 25 H 0.117 0.883 26 H 0.186 0.814 27 H 0.183 0.817 28 H 0.140 0.860 29 H 0.411 0.589 30 H -0.006 1.006 31 H -0.006 1.006 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.685 -14.399 16.459 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.029 4.029 4 C -0.154 4.154 5 C -0.095 4.095 6 C -0.151 4.151 7 C -0.075 4.075 8 C 0.332 3.668 9 O -0.472 6.472 10 N -0.335 5.335 11 C 0.141 3.859 12 C -0.597 4.597 13 H 0.097 0.903 14 C -0.193 4.193 15 N -0.567 5.567 16 Si 0.810 3.190 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.182 1.182 20 N -0.191 5.191 21 H 0.058 0.942 22 H 0.097 0.903 23 H 0.069 0.931 24 H 0.102 0.898 25 H 0.135 0.865 26 H 0.203 0.797 27 H 0.200 0.800 28 H 0.158 0.842 29 H 0.247 0.753 30 H 0.012 0.988 31 H 0.012 0.988 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.303 -13.690 15.602 21.693 hybrid contribution -0.165 0.440 -0.399 0.617 sum 6.138 -13.250 15.202 21.080 Atomic orbital electron populations 1.21683 0.94724 1.02534 1.01452 1.20625 0.96496 0.88474 1.04972 1.22008 0.93835 0.96913 0.90149 1.22700 0.96141 0.97252 0.99322 1.22046 0.97773 0.92835 0.96872 1.22246 0.96158 1.02382 0.94349 1.20864 0.98831 0.91455 0.96361 1.18682 0.79289 0.86678 0.82192 1.90687 1.60267 1.19613 1.76635 1.46146 1.44162 1.16064 1.27105 1.18691 0.93156 0.89529 0.84508 1.21557 1.27909 0.98493 1.11743 0.90322 1.26062 0.98363 0.95870 0.99028 1.70129 1.44499 1.12094 1.29999 0.85122 0.78171 0.78756 0.76964 1.19402 1.20501 1.18151 1.67248 1.23793 1.02515 1.25562 0.94190 0.90345 0.93094 0.89808 0.86512 0.79703 0.79992 0.84227 0.75307 0.98843 0.98813 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.77 71.98 0.70 -1.98 16 2 C -0.07 -1.08 6.33 29.85 0.19 -0.89 16 3 C 0.11 2.52 6.18 42.70 0.26 2.78 16 4 C -0.13 -2.15 9.72 22.44 0.22 -1.93 16 5 C -0.07 -1.26 10.17 22.45 0.23 -1.04 16 6 C -0.13 -3.73 9.63 22.61 0.22 -3.51 16 7 C 0.06 2.24 6.75 41.89 0.28 2.52 16 8 C 0.55 25.68 7.81 86.88 0.68 26.36 16 9 O -0.59 -31.65 16.32 -3.75 -0.06 -31.71 16 10 N -0.69 -33.87 5.54 -469.40 -2.60 -36.47 16 11 C 0.26 15.51 5.43 85.64 0.46 15.97 16 12 C -0.56 -32.31 9.28 25.60 0.24 -32.07 16 13 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 14 C 0.01 0.38 5.46 84.65 0.46 0.84 16 15 N -0.93 -57.31 13.29 21.44 0.28 -57.03 16 16 Si 0.99 43.73 29.54 68.60 2.03 45.76 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 20 N -0.48 -15.32 9.05 -173.08 -1.57 -16.89 16 21 H 0.04 0.97 7.94 -2.39 -0.02 0.95 16 22 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 23 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.12 0.94 7.87 -2.38 -0.02 0.92 16 26 H 0.19 1.17 7.95 -2.91 -0.02 1.15 16 27 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 28 H 0.14 4.09 7.64 -2.91 -0.02 4.07 16 29 H 0.41 18.41 7.65 -92.71 -0.71 17.70 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -76.04 285.30 2.44 -73.59 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.42 Total: 15.67 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 3.95 Total: 7.08 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -3.88 Total: -110.38 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.06 Total: -31.71 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -76.04 2.44 -73.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451241085.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.726 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds