Wall clock time and date at job start Sun Mar 29 2020 22:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47196 * 194.24019 * 3 2 1 5 5 C 1.36939 * 119.99792 * 264.66280 * 4 3 2 6 6 H 1.07996 * 119.99906 * 195.62335 * 5 4 3 7 7 C 1.38814 * 119.99988 * 15.62255 * 5 4 3 8 8 N 1.31620 * 119.99842 * 21.28726 * 7 5 4 9 9 Si 1.86797 * 119.99964 * 201.28326 * 7 5 4 10 10 H 1.48495 * 109.47206 * 90.00318 * 9 7 5 11 11 H 1.48504 * 109.47056 * 210.00291 * 9 7 5 12 12 H 1.48495 * 109.47145 * 330.00098 * 9 7 5 13 13 C 1.46499 * 120.00187 * 84.66406 * 4 3 2 14 14 C 1.50700 * 109.47079 * 270.00175 * 13 4 3 15 15 N 1.30252 * 125.61985 * 89.69404 * 14 13 4 16 16 C 1.34483 * 108.69903 * 180.26598 * 15 14 13 17 17 C 1.34329 * 107.67246 * 359.97438 * 16 15 14 18 18 C 1.50698 * 126.44557 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47221 * 90.00190 * 18 17 16 20 20 O 1.33973 * 125.61860 * 270.00000 * 14 13 4 21 21 H 4.40636 * 5.51444 * 179.97438 * 4 1 2 22 22 H 1.08997 * 109.47473 * 74.23498 * 3 2 1 23 23 H 1.09005 * 109.47303 * 314.23408 * 3 2 1 24 24 H 0.96998 * 120.00069 * 180.02562 * 8 7 5 25 25 H 1.09002 * 109.46874 * 150.00055 * 13 4 3 26 26 H 1.08997 * 109.47247 * 30.00222 * 13 4 3 27 27 H 1.07998 * 126.16429 * 180.02562 * 16 15 14 28 28 H 1.09003 * 109.46969 * 210.00089 * 18 17 16 29 29 H 1.09003 * 109.47034 * 330.00330 * 18 17 16 30 30 H 1.08997 * 109.47090 * 300.00289 * 19 18 17 31 31 H 1.09002 * 109.46831 * 59.99595 * 19 18 17 32 32 H 1.09000 * 109.46969 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3396 0.3398 5 6 3.4656 2.2203 -0.6550 6 1 4.0532 3.0970 -0.4262 7 6 3.0467 1.9860 -1.9576 8 7 2.0190 1.1962 -2.1863 9 14 3.9415 2.7918 -3.3856 10 1 5.0415 1.9057 -3.8438 11 1 2.9893 3.0169 -4.5027 12 1 4.5050 4.0933 -2.9456 13 6 3.2665 1.7365 1.7437 14 6 1.9781 2.3615 2.2130 15 7 0.9756 1.7235 2.7465 16 6 0.0041 2.6085 3.0320 17 6 0.4367 3.8238 2.6576 18 6 -0.3184 5.1217 2.7863 19 6 -0.0049 5.7620 4.1400 20 8 1.6726 3.6642 2.1451 21 1 -1.0502 -0.0003 -0.0003 22 1 3.0095 -0.2784 -0.9890 23 1 3.0097 -0.7161 0.7363 24 1 1.7265 1.0322 -3.0965 25 1 4.0775 2.4582 1.8421 26 1 3.4863 0.8581 2.3504 27 1 -0.9514 2.3828 3.4819 28 1 -0.0175 5.7979 1.9861 29 1 -1.3887 4.9280 2.7151 30 1 -0.3057 5.0857 4.9402 31 1 1.0654 5.9556 4.2112 32 1 -0.5506 6.7009 4.2329 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491750950.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:28 Heat of formation + Delta-G solvation = 99.831161 kcal Electronic energy + Delta-G solvation = -16405.412618 eV Core-core repulsion = 13756.454799 eV Total energy + Delta-G solvation = -2648.957819 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.42275 -36.24498 -33.96623 -33.80075 -31.65287 -31.40808 -28.84330 -26.41103 -25.85290 -23.33657 -22.10541 -21.05718 -20.00030 -17.47888 -16.52262 -16.32146 -15.72044 -15.02778 -14.48029 -14.33319 -13.73162 -13.57242 -13.25749 -12.75804 -12.38045 -12.29320 -11.65276 -11.51546 -11.40515 -11.08552 -10.99149 -10.79061 -10.46036 -10.30559 -10.06896 -9.64761 -8.91664 -8.84295 -8.39422 -7.91472 -7.23541 -5.89776 -3.33206 2.22684 3.31019 3.38440 3.40965 3.47745 3.52936 4.25676 4.45668 4.59516 4.88651 5.05209 5.22251 5.29646 5.31598 5.58988 5.65110 5.72923 5.82421 5.88204 5.93247 6.16596 6.23376 6.31321 6.56110 6.70650 6.81834 7.13782 7.22136 7.48104 7.66657 8.12960 8.63274 8.98039 9.32639 9.60437 10.04700 11.12173 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.025087 B = 0.008621 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.859453 B = 3247.038653 C = 3709.310936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.095 4.095 3 C 0.266 3.734 4 N -0.563 5.563 5 C -0.275 4.275 6 H 0.082 0.918 7 C 0.008 3.992 8 N -0.881 5.881 9 Si 0.909 3.091 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.278 1.278 13 C 0.226 3.774 14 C 0.197 3.803 15 N -0.492 5.492 16 C -0.041 4.041 17 C -0.077 4.077 18 C -0.032 4.032 19 C -0.146 4.146 20 O -0.199 6.199 21 H 0.185 0.815 22 H 0.102 0.898 23 H 0.042 0.958 24 H 0.257 0.743 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.166 0.834 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 3.983 8.765 9.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.097 4.097 3 C 0.142 3.858 4 N -0.281 5.281 5 C -0.404 4.404 6 H 0.100 0.900 7 C -0.192 4.192 8 N -0.522 5.522 9 Si 0.738 3.262 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.203 1.203 13 C 0.096 3.904 14 C -0.013 4.013 15 N -0.221 5.221 16 C -0.180 4.180 17 C -0.131 4.131 18 C -0.070 4.070 19 C -0.204 4.204 20 O -0.085 6.085 21 H 0.202 0.798 22 H 0.120 0.880 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.184 0.816 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.465 3.308 8.641 9.368 hybrid contribution -0.523 1.300 -1.101 1.782 sum -1.988 4.608 7.541 9.058 Atomic orbital electron populations 1.23990 0.95168 1.04463 1.07287 1.23908 0.95015 0.96339 0.94461 1.17994 0.83184 0.84545 1.00105 1.44669 1.72495 1.11512 0.99450 1.19369 1.27713 1.06631 0.86693 0.90036 1.25024 0.96273 0.99494 0.98452 1.70174 1.22465 1.39687 1.19918 0.86194 0.79077 0.79041 0.81885 1.21043 1.21828 1.20332 1.19898 0.86868 0.97026 0.86656 1.29019 1.00867 0.76506 0.94911 1.70409 1.00780 1.33589 1.17303 1.22822 1.00449 0.88844 1.05902 1.23161 0.86575 0.98550 1.04830 1.19876 0.97955 0.90421 0.98769 1.21775 1.02110 1.00226 0.96274 1.84437 1.29954 1.31231 1.62917 0.79797 0.88016 0.94008 0.93238 0.90325 0.89405 0.81631 0.90424 0.89461 0.92392 0.92435 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.16 19.25 29.55 0.57 -6.59 16 2 C -0.09 -2.41 11.33 -37.12 -0.42 -2.83 16 3 C 0.27 6.38 5.45 -6.83 -0.04 6.35 16 4 N -0.56 -13.69 2.49 -177.95 -0.44 -14.14 16 5 C -0.28 -7.27 9.68 -15.06 -0.15 -7.42 16 6 H 0.08 2.10 7.89 -52.49 -0.41 1.69 16 7 C 0.01 0.22 4.89 -17.43 -0.09 0.13 16 8 N -0.88 -24.92 9.38 55.49 0.52 -24.40 16 9 Si 0.91 21.20 29.60 -169.99 -5.03 16.16 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.23 4.67 6.32 -5.19 -0.03 4.64 16 14 C 0.20 4.38 7.63 -12.95 -0.10 4.28 16 15 N -0.49 -10.83 11.29 -11.10 -0.13 -10.96 16 16 C -0.04 -0.79 11.80 -17.77 -0.21 -1.00 16 17 C -0.08 -1.44 6.64 -35.69 -0.24 -1.68 16 18 C -0.03 -0.44 6.49 -27.88 -0.18 -0.62 16 19 C -0.15 -1.63 9.89 37.16 0.37 -1.26 16 20 O -0.20 -4.38 10.78 5.35 0.06 -4.32 16 21 H 0.18 3.98 7.80 -54.08 -0.42 3.56 16 22 H 0.10 2.60 6.32 -51.93 -0.33 2.28 16 23 H 0.04 0.87 7.97 -51.93 -0.41 0.46 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.08 1.47 8.02 -51.93 -0.42 1.05 16 26 H 0.09 1.59 7.94 -51.93 -0.41 1.18 16 27 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 287.28 15.07 4.33 4.33 Total: -1.00 -31.69 287.28 -5.28 -36.98 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.08 Total: 2.35 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.51 Total: -6.02 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.05 Total: -49.49 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: 0.06 Total: -4.32 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.69 -5.28 -36.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491750950.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.809 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds