Wall clock time and date at job start Sun Mar 29 2020 21:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47242 * 2 1 4 4 N 1.40117 * 126.05205 * 270.00123 * 3 2 1 5 5 C 1.30631 * 109.42165 * 179.97438 * 4 3 2 6 6 C 1.40675 * 108.72770 * 359.97438 * 5 4 3 7 7 N 1.35666 * 133.75504 * 180.31163 * 6 5 4 8 8 C 1.30027 * 121.07702 * 180.18050 * 7 6 5 9 9 N 1.36294 * 122.19932 * 359.48429 * 8 7 6 10 10 C 1.37091 * 119.75710 * 180.25977 * 9 8 7 11 11 H 1.08003 * 119.99687 * 208.73614 * 10 9 8 12 12 C 1.39094 * 120.00327 * 28.73922 * 10 9 8 13 13 N 1.31242 * 119.99981 * 17.85122 * 12 10 9 14 14 Si 1.86801 * 120.00021 * 197.85729 * 12 10 9 15 15 H 1.48504 * 109.47372 * 59.99802 * 14 12 10 16 16 H 1.48503 * 109.47118 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46801 * 299.99703 * 14 12 10 18 18 C 1.35138 * 120.47869 * 0.23860 * 9 8 7 19 19 O 1.21878 * 120.83597 * 179.97438 * 18 9 8 20 20 C 1.36645 * 126.05488 * 89.99894 * 3 2 1 21 21 H 1.08995 * 109.47039 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47001 * 300.00246 * 1 2 3 23 23 H 1.08996 * 109.47102 * 60.00110 * 1 2 3 24 24 H 1.08997 * 109.47001 * 239.99754 * 2 1 3 25 25 H 1.09005 * 109.46954 * 119.99943 * 2 1 3 26 26 H 1.08002 * 125.63024 * 179.97438 * 5 4 3 27 27 H 1.07995 * 118.90103 * 179.77035 * 8 7 6 28 28 H 0.97001 * 119.99882 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2933 2.1586 -1.1328 5 6 2.7100 3.3389 -0.7590 6 6 2.7263 3.3878 0.6469 7 7 3.0583 4.3454 1.5486 8 6 2.9828 4.1189 2.8268 9 7 2.5608 2.9242 3.3289 10 6 2.4953 2.7415 4.6860 11 1 2.6235 1.7543 5.1048 12 6 2.2638 3.8276 5.5237 13 7 1.7670 4.9394 5.0344 14 14 2.6602 3.7036 7.3449 15 1 4.1073 3.4188 7.5184 16 1 2.3252 4.9869 8.0129 17 1 1.8637 2.6067 7.9512 18 6 2.2060 1.9186 2.4988 19 8 1.8282 0.8475 2.9407 20 6 2.2865 2.1394 1.1047 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 2.9949 4.1440 -1.4200 27 1 3.2593 4.9053 3.5134 28 1 1.6059 5.6969 5.6185 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601087349.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:14 Heat of formation + Delta-G solvation = 49.021929 kcal Electronic energy + Delta-G solvation = -16354.741090 eV Core-core repulsion = 13600.039675 eV Total energy + Delta-G solvation = -2754.701416 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.96814 -40.72392 -38.27411 -36.12435 -35.05764 -33.58907 -31.41999 -29.94956 -27.91860 -25.29733 -24.77521 -23.94836 -21.64871 -20.27911 -19.41903 -18.66516 -17.63514 -17.23577 -16.54489 -15.99582 -15.67214 -15.38565 -15.23908 -14.75210 -14.51796 -13.97048 -13.79837 -13.41526 -13.11404 -13.01207 -12.74308 -12.46473 -12.14167 -12.07038 -11.55248 -11.05800 -10.81756 -10.62204 -10.53269 -8.93539 -8.61666 -6.54194 -0.08420 0.63331 1.19497 1.42203 1.46167 1.58200 1.67347 2.10520 2.48321 2.55945 3.11461 3.35971 3.48398 3.68499 3.91757 4.04236 4.22804 4.29337 4.50052 4.66307 4.79159 5.01225 5.07173 5.14279 5.34202 5.57859 5.82443 6.05277 6.34874 6.47206 6.69998 7.26624 7.34215 8.26653 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.037124 B = 0.008591 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.038130 B = 3258.507219 C = 3815.496231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 N -0.356 5.356 4 N -0.250 5.250 5 C 0.071 3.929 6 C 0.015 3.985 7 N -0.519 5.519 8 C 0.340 3.660 9 N -0.345 5.345 10 C -0.378 4.378 11 H 0.102 0.898 12 C 0.024 3.976 13 N -0.864 5.864 14 Si 1.016 2.984 15 H -0.254 1.254 16 H -0.260 1.260 17 H -0.270 1.270 18 C 0.478 3.522 19 O -0.603 6.603 20 C -0.070 4.070 21 H 0.107 0.893 22 H 0.026 0.974 23 H 0.066 0.934 24 H 0.122 0.878 25 H 0.082 0.918 26 H 0.235 0.765 27 H 0.209 0.791 28 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 -1.395 -4.477 4.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.010 3.990 3 N -0.146 5.146 4 N -0.071 5.071 5 C -0.119 4.119 6 C -0.111 4.111 7 N -0.244 5.244 8 C 0.055 3.945 9 N -0.049 5.049 10 C -0.506 4.506 11 H 0.120 0.880 12 C -0.186 4.186 13 N -0.496 5.496 14 Si 0.835 3.165 15 H -0.178 1.178 16 H -0.184 1.184 17 H -0.195 1.195 18 C 0.277 3.723 19 O -0.489 6.489 20 C -0.196 4.196 21 H 0.125 0.875 22 H 0.045 0.955 23 H 0.085 0.915 24 H 0.140 0.860 25 H 0.100 0.900 26 H 0.251 0.749 27 H 0.225 0.775 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.964 -2.070 -5.574 6.024 hybrid contribution -0.302 -0.233 1.797 1.837 sum 0.662 -2.303 -3.777 4.473 Atomic orbital electron populations 1.22078 0.93664 1.04281 1.01303 1.21920 0.96009 0.76179 1.04852 1.48378 1.53523 1.12391 1.00351 1.76868 1.18000 1.03814 1.08375 1.23972 1.00345 0.96246 0.91347 1.20204 1.05688 0.89613 0.95546 1.68203 1.26219 1.30388 0.99606 1.25062 0.90372 0.88294 0.90750 1.42601 1.42581 1.11056 1.08641 1.20172 1.53367 0.98364 0.78650 0.88000 1.26587 0.91687 0.93722 1.06555 1.69805 1.33858 1.05065 1.40872 0.84682 0.79919 0.78750 0.73190 1.17758 1.18355 1.19490 1.16443 0.83805 0.86775 0.85302 1.90661 1.53042 1.26053 1.79156 1.20696 1.11762 0.96472 0.90644 0.87492 0.95458 0.91467 0.85951 0.89973 0.74854 0.77486 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 10.24 71.98 0.74 -3.90 15 2 C 0.13 4.32 6.93 86.38 0.60 4.92 15 3 N -0.36 -14.54 3.66 -338.79 -1.24 -15.78 15 4 N -0.25 -9.16 12.49 -56.59 -0.71 -9.87 15 5 C 0.07 2.52 12.02 85.47 1.03 3.55 15 6 C 0.01 0.66 7.35 39.59 0.29 0.95 15 7 N -0.52 -23.98 10.49 -191.60 -2.01 -25.98 15 8 C 0.34 16.57 10.28 180.00 1.85 18.42 15 9 N -0.35 -18.39 2.75 -479.35 -1.32 -19.71 15 10 C -0.38 -19.89 9.11 84.08 0.77 -19.13 15 11 H 0.10 5.54 7.58 -2.91 -0.02 5.51 15 12 C 0.02 1.10 4.98 84.99 0.42 1.52 15 13 N -0.86 -41.12 11.19 21.68 0.24 -40.87 15 14 Si 1.02 35.99 29.59 68.60 2.03 38.02 15 15 H -0.25 -8.59 7.11 99.48 0.71 -7.88 15 16 H -0.26 -8.48 7.11 99.48 0.71 -7.77 15 17 H -0.27 -9.76 7.11 99.48 0.71 -9.05 15 18 C 0.48 26.02 7.42 84.96 0.63 26.65 15 19 O -0.60 -34.84 15.73 -4.92 -0.08 -34.92 15 20 C -0.07 -3.36 6.93 39.60 0.27 -3.08 15 21 H 0.11 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.03 1.00 8.14 -2.39 -0.02 0.98 15 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.12 3.13 8.14 -2.39 -0.02 3.11 15 25 H 0.08 3.02 7.18 -2.38 -0.02 3.00 15 26 H 0.24 5.91 8.06 -2.91 -0.02 5.89 15 27 H 0.21 9.69 6.14 -2.91 -0.02 9.67 15 28 H 0.30 12.79 8.31 -92.71 -0.77 12.02 15 Total: -1.00 -64.20 252.31 4.71 -59.49 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 1.19 Total: 19.72 kcal Atomic # 6 Polarization: 23.31 SS G_CDS: 6.60 Total: 29.91 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -5.03 Total: -112.22 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.08 Total: -34.92 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -64.20 4.71 -59.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601087349.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.515 kcal (2) G-P(sol) polarization free energy of solvation -64.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds