Wall clock time and date at job start Sun Mar 29 2020 21:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47453 * 2 1 4 4 H 1.09001 * 109.46991 * 305.00745 * 3 2 1 5 5 C 1.50695 * 109.47426 * 184.99997 * 3 2 1 6 6 O 1.21207 * 120.00557 * 239.99928 * 5 3 2 7 7 O 1.34313 * 119.99849 * 60.00686 * 5 3 2 8 8 C 1.34924 * 117.00023 * 179.97438 * 7 5 3 9 9 H 1.07999 * 119.99969 * 359.97438 * 8 7 5 10 10 C 1.38754 * 119.99738 * 179.97438 * 8 7 5 11 11 N 1.31442 * 120.00467 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99846 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46819 * 59.99988 * 12 10 8 14 14 H 1.48494 * 109.47285 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47086 * 300.00284 * 12 10 8 16 16 C 1.50703 * 109.47098 * 65.00160 * 3 2 1 17 17 C 1.38241 * 119.99751 * 59.72518 * 16 3 2 18 18 C 1.38232 * 119.99573 * 179.78961 * 17 16 3 19 19 C 1.38233 * 120.00155 * 0.44401 * 18 17 16 20 20 C 1.38230 * 120.00103 * 359.81316 * 19 18 17 21 21 C 1.38231 * 120.00048 * 359.97438 * 20 19 18 22 22 H 1.09004 * 109.47082 * 299.99325 * 1 2 3 23 23 H 1.08997 * 109.47260 * 59.99954 * 1 2 3 24 24 H 1.09003 * 109.47195 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47092 * 240.00118 * 2 1 3 26 26 H 1.09000 * 109.47206 * 120.00814 * 2 1 3 27 27 H 0.96996 * 119.99975 * 179.97438 * 11 10 8 28 28 H 1.07998 * 119.99643 * 0.02562 * 17 16 3 29 29 H 1.08003 * 119.99789 * 180.27426 * 18 17 16 30 30 H 1.08004 * 119.99972 * 179.83172 * 19 18 17 31 31 H 1.08004 * 120.00044 * 180.02562 * 20 19 18 32 32 H 1.07999 * 120.00015 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1238 6 8 4.2213 1.9431 0.7472 7 8 4.1277 0.8931 -1.1995 8 6 5.4756 0.9286 -1.2486 9 1 6.0332 1.3865 -0.4450 10 6 6.1451 0.3769 -2.3314 11 7 5.4664 -0.1800 -3.3096 12 14 8.0112 0.4267 -2.3997 13 1 8.5688 -0.2946 -1.2275 14 1 8.4784 -0.2250 -3.6495 15 1 8.4698 1.8389 -2.3759 16 6 1.6414 2.1162 1.2877 17 6 2.0722 1.6046 2.4976 18 6 1.7101 2.2252 3.6785 19 6 0.9098 3.3519 3.6502 20 6 0.4747 3.8603 2.4407 21 6 0.8403 3.2424 1.2594 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5140 0.8899 27 1 5.9345 -0.5654 -4.0667 28 1 2.6947 0.7224 2.5198 29 1 2.0504 1.8281 4.6236 30 1 0.6247 3.8352 4.5730 31 1 -0.1503 4.7409 2.4185 32 1 0.5000 3.6394 0.3145 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766052237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:23 Heat of formation + Delta-G solvation = -87.553337 kcal Electronic energy + Delta-G solvation = -16161.600218 eV Core-core repulsion = 13472.224047 eV Total energy + Delta-G solvation = -2689.376171 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.44344 -39.94078 -37.30264 -36.04070 -34.28525 -31.80288 -31.51023 -28.95006 -27.09300 -23.87803 -23.21749 -23.00876 -20.95033 -19.86592 -18.44787 -17.78156 -16.79006 -16.63108 -16.34376 -16.01314 -15.60738 -15.16390 -14.65031 -14.23745 -14.12117 -13.62055 -13.49801 -13.40436 -13.08020 -12.83160 -12.46676 -12.33834 -12.18622 -12.05819 -12.02042 -11.70380 -11.58806 -10.91539 -10.70472 -9.75070 -9.60753 -8.54608 -6.34631 0.44760 0.56292 1.30291 1.32265 1.48065 1.63575 2.10917 2.67593 2.95440 3.08660 3.59251 3.86663 4.03784 4.20118 4.20957 4.31265 4.44324 4.51029 4.67899 4.70713 4.83899 4.90418 5.05879 5.10360 5.16411 5.19445 5.26714 5.38273 5.60140 5.64576 5.76010 5.82461 6.16273 6.65865 6.90241 7.77166 8.65726 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.035752 B = 0.006588 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.982680 B = 4249.283760 C = 4696.127905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.027 4.027 4 H 0.115 0.885 5 C 0.399 3.601 6 O -0.575 6.575 7 O -0.241 6.241 8 C -0.423 4.423 9 H 0.078 0.922 10 C -0.002 4.002 11 N -0.901 5.901 12 Si 1.015 2.985 13 H -0.263 1.263 14 H -0.258 1.258 15 H -0.263 1.263 16 C -0.075 4.075 17 C -0.108 4.108 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.122 4.122 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.279 0.721 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.054 3.656 8.656 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.132 0.868 5 C 0.247 3.753 6 O -0.472 6.472 7 O -0.149 6.149 8 C -0.499 4.499 9 H 0.096 0.904 10 C -0.203 4.203 11 N -0.538 5.538 12 Si 0.834 3.166 13 H -0.187 1.187 14 H -0.181 1.181 15 H -0.187 1.187 16 C -0.075 4.075 17 C -0.126 4.126 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.140 4.140 21 C -0.139 4.139 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.171 0.829 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.852 3.660 8.655 14.356 hybrid contribution 1.225 -0.174 -0.238 1.260 sum -9.628 3.486 8.417 13.255 Atomic orbital electron populations 1.21683 0.92038 1.02883 1.02642 1.21474 0.98680 0.92205 1.02160 1.19940 0.86338 1.00097 0.98196 0.86754 1.24283 0.92859 0.77578 0.80612 1.90523 1.66994 1.47195 1.42473 1.83900 1.23400 1.66872 1.40754 1.21357 0.78696 1.41547 1.08296 0.90411 1.26497 1.06059 0.94342 0.93375 1.70063 1.38729 1.35876 1.09176 0.84725 0.73524 0.79467 0.78879 1.18731 1.18138 1.18730 1.19368 0.98586 0.96756 0.92785 1.20953 0.98434 1.00067 0.93148 1.21348 0.98850 0.96939 0.97713 1.21491 0.97400 0.95843 0.99211 1.21436 1.00373 1.00435 0.91744 1.21270 0.98181 0.94422 1.00070 0.92004 0.91515 0.91032 0.92115 0.92368 0.91175 0.88671 0.84547 0.83082 0.82950 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.73 71.98 0.70 -2.71 16 2 C -0.11 -3.70 5.26 30.59 0.16 -3.54 16 3 C -0.03 -1.03 2.48 -12.29 -0.03 -1.06 16 4 H 0.11 4.04 7.88 -2.39 -0.02 4.02 16 5 C 0.40 20.93 7.08 71.23 0.50 21.44 16 6 O -0.57 -32.81 14.36 20.78 0.30 -32.52 16 7 O -0.24 -14.58 9.56 14.81 0.14 -14.44 16 8 C -0.42 -26.39 9.65 67.94 0.66 -25.74 16 9 H 0.08 4.94 6.86 -2.91 -0.02 4.92 16 10 C 0.00 -0.14 5.49 84.87 0.47 0.33 16 11 N -0.90 -53.94 13.67 21.62 0.30 -53.65 16 12 Si 1.02 44.33 29.55 68.60 2.03 46.36 16 13 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 14 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 15 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 16 C -0.07 -2.58 3.37 -19.86 -0.07 -2.65 16 17 C -0.11 -3.74 7.88 22.27 0.18 -3.57 16 18 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 19 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 20 C -0.12 -2.82 10.05 22.27 0.22 -2.60 16 21 C -0.12 -3.42 9.67 22.27 0.22 -3.20 16 22 H 0.06 1.48 7.38 -2.38 -0.02 1.46 16 23 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 2.35 8.00 -2.38 -0.02 2.33 16 26 H 0.06 2.03 7.21 -2.39 -0.02 2.02 16 27 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.10 3.64 7.48 -2.91 -0.02 3.61 16 29 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.14 3.26 7.95 -2.91 -0.02 3.24 16 Total: -1.00 -74.25 280.72 7.32 -66.93 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.10 Total: 16.58 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 3.45 Total: -29.27 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.30 Total: -53.65 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: 0.44 Total: -46.96 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -74.25 7.32 -66.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766052237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.624 kcal (2) G-P(sol) polarization free energy of solvation -74.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds