Wall clock time and date at job start Sun Mar 29 2020 21:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34282 * 125.75014 * 2 1 4 4 C 1.38114 * 107.40510 * 180.02562 * 3 2 1 5 5 C 1.47354 * 126.42122 * 179.97438 * 4 3 2 6 6 O 1.21621 * 120.00177 * 349.53623 * 5 4 3 7 7 N 1.34778 * 119.99670 * 169.54641 * 5 4 3 8 8 C 1.36978 * 119.99723 * 180.92157 * 7 5 4 9 9 H 1.08002 * 120.00425 * 359.97438 * 8 7 5 10 10 C 1.38979 * 119.99970 * 179.70823 * 8 7 5 11 11 N 1.31420 * 120.00056 * 143.56444 * 10 8 7 12 12 Si 1.86795 * 120.00027 * 323.56891 * 10 8 7 13 13 H 1.48496 * 109.47592 * 96.64975 * 12 10 8 14 14 H 1.48499 * 109.47115 * 216.65040 * 12 10 8 15 15 H 1.48502 * 109.46844 * 336.64571 * 12 10 8 16 16 C 1.46500 * 119.99988 * 0.91343 * 7 5 4 17 17 C 1.47199 * 109.46959 * 83.08711 * 16 7 5 18 18 N 5.33127 * 151.52504 * 227.98474 * 2 1 3 19 19 C 1.41323 * 107.15244 * 0.24420 * 4 3 2 20 20 N 1.30442 * 108.02911 * 359.59078 * 19 4 3 21 21 H 1.08999 * 109.46783 * 90.00302 * 1 2 3 22 22 H 1.08996 * 109.46791 * 209.99667 * 1 2 3 23 23 H 1.08993 * 109.46708 * 329.99909 * 1 2 3 24 24 H 1.08004 * 126.29889 * 0.03397 * 3 2 1 25 25 H 0.97001 * 120.00028 * 180.02562 * 11 10 8 26 26 H 1.09005 * 109.46992 * 203.08411 * 16 7 5 27 27 H 1.08998 * 109.47485 * 323.08180 * 16 7 5 28 28 H 1.08000 * 125.98151 * 179.76528 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.0898 0.0000 4 6 3.5605 0.6551 -0.0006 5 6 4.7641 1.5052 -0.0013 6 8 4.6632 2.7020 -0.1928 7 7 5.9769 0.9564 0.2099 8 6 7.0937 1.7493 0.2280 9 1 7.0025 2.8142 0.0726 10 6 8.3435 1.1843 0.4519 11 7 9.3980 1.6508 -0.1785 12 14 8.5245 -0.2384 1.6487 13 1 8.5105 -1.5205 0.8996 14 1 9.8090 -0.1078 2.3823 15 1 7.3979 -0.2179 2.6160 16 6 6.1005 -0.4881 0.4204 17 6 6.1294 -1.1730 -0.8822 18 7 6.1514 -1.7013 -1.8885 19 6 3.5311 -0.7578 -0.0067 20 7 2.2826 -1.1357 -0.0007 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3632 0.8899 0.5138 24 1 1.9167 2.1173 0.0005 25 1 10.2703 1.2562 -0.0225 26 1 7.0227 -0.6987 0.9621 27 1 5.2492 -0.8451 0.9999 28 1 4.3917 -1.4104 -0.0123 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115931985.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:34 Heat of formation + Delta-G solvation = 139.538634 kcal Electronic energy + Delta-G solvation = -16163.936488 eV Core-core repulsion = 13413.160171 eV Total energy + Delta-G solvation = -2750.776317 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.17768 -38.75105 -36.42737 -34.71731 -33.36958 -32.19521 -29.98659 -28.38422 -27.15707 -25.09863 -21.90968 -21.03219 -19.31782 -18.51499 -17.16173 -17.00229 -16.31236 -15.42550 -15.30812 -14.52837 -13.95164 -13.78122 -13.13186 -13.06482 -12.82506 -12.70390 -12.64335 -12.28349 -12.06458 -11.90834 -11.64625 -10.95588 -10.79538 -10.52606 -9.59589 -9.41796 -9.35923 -8.74627 -8.35240 -8.24595 -6.63050 -3.88656 1.84880 2.46369 2.51670 2.83287 2.96915 3.03825 3.09536 3.20190 3.92964 3.98370 4.19691 4.44814 4.61650 4.93104 5.00119 5.02971 5.11113 5.19906 5.26433 5.50523 5.54552 5.70483 5.96009 6.56937 7.01369 7.31551 7.72205 7.87677 8.01732 8.28785 8.80556 9.15840 9.61152 10.46797 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.008825 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.541289 B = 3172.168306 C = 3513.271878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.371 5.371 3 C 0.109 3.891 4 C -0.261 4.261 5 C 0.532 3.468 6 O -0.566 6.566 7 N -0.440 5.440 8 C -0.334 4.334 9 H 0.129 0.871 10 C 0.060 3.940 11 N -0.823 5.823 12 Si 0.846 3.154 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.256 1.256 16 C 0.170 3.830 17 C 0.196 3.804 18 N -0.418 5.418 19 C 0.042 3.958 20 N -0.301 5.301 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.187 0.813 25 H 0.278 0.722 26 H 0.096 0.904 27 H 0.128 0.872 28 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.941 -5.135 4.659 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.152 5.152 3 C -0.041 4.041 4 C -0.275 4.275 5 C 0.323 3.677 6 O -0.449 6.449 7 N -0.160 5.160 8 C -0.459 4.459 9 H 0.147 0.853 10 C -0.149 4.149 11 N -0.456 5.456 12 Si 0.675 3.325 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.181 1.181 16 C 0.043 3.957 17 C -0.124 4.124 18 N -0.097 5.097 19 C -0.145 4.145 20 N -0.122 5.122 21 H 0.093 0.907 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.204 0.796 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.145 0.855 28 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.670 -6.245 3.023 15.330 hybrid contribution 0.949 0.037 1.022 1.395 sum -12.722 -6.208 4.045 14.722 Atomic orbital electron populations 1.21884 0.74119 1.04546 1.03480 1.48336 1.06826 1.04025 1.56013 1.22847 0.89952 0.93366 0.97959 1.20588 0.94475 0.93065 1.19411 1.16681 0.81006 0.86769 0.83276 1.90642 1.85332 1.14851 1.54094 1.43477 1.07303 1.02179 1.63058 1.19215 0.81791 0.94377 1.50514 0.85312 1.25043 0.95295 0.97257 0.97264 1.69995 1.00725 1.41431 1.33458 0.87371 0.78580 0.82704 0.83886 1.19881 1.20750 1.18144 1.19908 1.04895 0.84042 0.86888 1.29780 0.93069 0.93695 0.95820 1.81099 1.08573 1.09560 1.10444 1.24962 0.95328 0.95022 0.99167 1.77092 1.01947 1.08041 1.25079 0.90663 0.89237 0.89271 0.79603 0.91168 0.88718 0.85477 0.78899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 11.44 59.85 0.68 1.50 15 2 N -0.37 -5.14 3.98 -67.57 -0.27 -5.40 15 3 C 0.11 1.68 11.32 -16.53 -0.19 1.49 15 4 C -0.26 -4.95 5.94 -105.06 -0.62 -5.58 15 5 C 0.53 12.40 7.54 -12.55 -0.09 12.30 15 6 O -0.57 -14.93 16.49 5.26 0.09 -14.85 15 7 N -0.44 -10.45 2.59 -119.17 -0.31 -10.76 15 8 C -0.33 -9.02 9.81 -14.98 -0.15 -9.17 15 9 H 0.13 3.88 7.38 -52.49 -0.39 3.49 15 10 C 0.06 1.56 5.31 -17.45 -0.09 1.47 15 11 N -0.82 -22.63 13.96 55.50 0.77 -21.86 15 12 Si 0.85 18.16 24.67 -169.99 -4.19 13.97 15 13 H -0.27 -5.53 7.00 56.52 0.40 -5.13 15 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 15 H -0.26 -5.04 6.94 56.52 0.39 -4.65 15 16 C 0.17 3.37 4.36 -6.83 -0.03 3.34 15 17 C 0.20 4.04 12.87 -20.74 -0.27 3.78 15 18 N -0.42 -9.06 18.54 42.18 0.78 -8.28 15 19 C 0.04 0.73 9.26 -16.97 -0.16 0.57 15 20 N -0.30 -4.95 12.50 30.87 0.39 -4.56 15 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 15 22 H 0.09 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.09 0.48 8.14 -51.93 -0.42 0.06 15 24 H 0.19 2.38 8.06 -52.48 -0.42 1.96 15 25 H 0.28 7.01 8.31 -40.82 -0.34 6.67 15 26 H 0.10 1.94 0.83 -51.93 -0.04 1.89 15 27 H 0.13 2.05 4.87 -51.93 -0.25 1.80 15 28 H 0.19 3.21 3.30 -52.49 -0.17 3.04 15 LS Contribution 248.81 15.07 3.75 3.75 Total: -1.00 -32.88 248.81 -1.60 -34.48 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -1.70 Total: 3.79 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -0.91 Total: 9.71 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 1.36 Total: -50.86 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.09 Total: -14.85 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -4.19 Total: 13.97 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.88 -1.60 -34.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115931985.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.023 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds