Wall clock time and date at job start Sun Mar 29 2020 22:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86795 * 120.00197 * 2 1 4 4 H 1.48499 * 109.47113 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47174 * 119.99800 * 3 2 1 6 6 H 1.48498 * 109.47015 * 239.99753 * 3 2 1 7 7 C 1.40027 * 119.99520 * 179.71985 * 2 1 3 8 8 H 1.08001 * 119.99878 * 151.81514 * 7 2 1 9 9 C 1.41310 * 120.00129 * 331.81708 * 7 2 1 10 10 C 1.40597 * 119.78323 * 168.27885 * 9 7 2 11 11 C 1.38351 * 119.14625 * 179.79381 * 10 9 7 12 12 C 1.38641 * 118.67888 * 0.47584 * 11 10 9 13 13 C 1.39756 * 119.49304 * 359.74662 * 12 11 10 14 14 N 1.38824 * 119.58320 * 179.97438 * 13 12 11 15 15 C 1.48534 * 111.00140 * 60.75153 * 14 13 12 16 16 C 1.54934 * 103.22943 * 159.72051 * 15 14 13 17 17 C 1.54598 * 102.91913 * 322.59127 * 16 15 14 18 18 H 1.09001 * 110.39061 * 262.99388 * 17 16 15 19 19 O 1.42906 * 110.30899 * 140.87349 * 17 16 15 20 20 C 1.47902 * 111.00198 * 178.15229 * 14 13 12 21 21 N 1.31975 * 120.82914 * 0.02562 * 13 12 11 22 22 H 0.96998 * 119.99994 * 174.93033 * 1 2 3 23 23 H 1.08000 * 120.42378 * 0.02562 * 10 9 7 24 24 H 1.07997 * 120.66082 * 180.19811 * 11 10 9 25 25 H 1.07999 * 120.24925 * 179.72150 * 12 11 10 26 26 H 1.09002 * 110.67002 * 278.16248 * 15 14 13 27 27 H 1.09004 * 110.66451 * 41.28820 * 15 14 13 28 28 H 1.08995 * 110.72567 * 204.23276 * 16 15 14 29 29 H 1.09000 * 110.72358 * 80.94269 * 16 15 14 30 30 H 0.96702 * 113.99934 * 64.28165 * 19 17 16 31 31 H 1.09000 * 109.91270 * 333.50612 * 20 14 13 32 32 H 1.09000 * 109.91402 * 94.80318 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2766 2.7464 -0.0006 5 1 3.0952 1.6963 1.2125 6 1 3.0953 1.6962 -1.2125 7 6 2.0075 -1.2127 0.0059 8 1 2.9915 -1.2704 -0.4356 9 6 1.4266 -2.3611 0.5895 10 6 2.0114 -3.6225 0.3807 11 6 1.4341 -4.7374 0.9618 12 6 0.2884 -4.5721 1.7249 13 6 -0.2484 -3.2926 1.8917 14 7 -1.3958 -3.1250 2.6550 15 6 -1.1743 -3.5710 4.0543 16 6 -2.2988 -2.8495 4.8387 17 6 -2.3817 -1.4742 4.1374 18 1 -1.8050 -0.7314 4.6886 19 8 -3.7439 -1.0576 4.0221 20 6 -1.7710 -1.6969 2.7415 21 7 0.3212 -2.2419 1.3320 22 1 -0.4850 -0.8367 -0.0742 23 1 2.9020 -3.7193 -0.2226 24 1 1.8647 -5.7176 0.8201 25 1 -0.1857 -5.4256 2.1864 26 1 -1.2819 -4.6527 4.1350 27 1 -0.1935 -3.2535 4.4085 28 1 -2.0237 -2.7320 5.8868 29 1 -3.2417 -3.3881 4.7442 30 1 -4.1807 -0.9020 4.8707 31 1 -0.8859 -1.0725 2.6195 32 1 -2.5057 -1.4588 1.9724 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116290772.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:20 Heat of formation + Delta-G solvation = -34.665132 kcal Electronic energy + Delta-G solvation = -16561.009778 eV Core-core repulsion = 13906.219763 eV Total energy + Delta-G solvation = -2654.790016 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.24183 -39.35878 -37.00457 -35.59196 -32.99415 -32.15401 -29.95064 -29.52013 -27.05710 -24.00447 -23.49141 -22.04420 -21.50163 -20.02677 -18.65172 -17.89332 -16.91670 -16.44535 -15.92637 -15.65754 -15.47257 -15.06409 -14.96923 -14.33265 -14.10853 -13.51929 -13.47006 -13.24611 -12.83929 -12.65958 -12.50828 -12.47131 -11.99568 -11.76633 -11.72507 -11.05458 -10.93363 -10.64496 -10.18998 -9.95015 -9.20143 -8.87873 -6.62836 0.77029 0.96885 1.50355 1.63160 1.80224 2.33165 2.64971 2.84729 3.21309 3.55317 3.58554 3.71657 4.11062 4.17172 4.28492 4.44096 4.50461 4.67084 4.75455 4.78535 4.80697 4.84048 4.96051 5.07375 5.16747 5.46353 5.63229 5.66155 5.76703 5.83403 6.03191 6.29426 6.71482 6.85480 6.91756 7.85033 8.04975 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.021368 B = 0.010126 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.069193 B = 2764.471137 C = 3848.893521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.006 3.994 3 Si 1.120 2.880 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.253 1.253 7 C -0.527 4.527 8 H 0.085 0.915 9 C 0.234 3.766 10 C -0.321 4.321 11 C -0.031 4.031 12 C -0.325 4.325 13 C 0.312 3.688 14 N -0.469 5.469 15 C 0.047 3.953 16 C -0.137 4.137 17 C 0.100 3.900 18 H 0.074 0.926 19 O -0.575 6.575 20 C 0.049 3.951 21 N -0.603 5.603 22 H 0.290 0.710 23 H 0.107 0.893 24 H 0.139 0.861 25 H 0.125 0.875 26 H 0.103 0.897 27 H 0.040 0.960 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.397 0.603 31 H 0.060 0.940 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 -1.875 9.749 10.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.217 4.217 3 Si 0.936 3.064 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.557 4.557 8 H 0.103 0.897 9 C 0.110 3.890 10 C -0.343 4.343 11 C -0.055 4.055 12 C -0.350 4.350 13 C 0.075 3.925 14 N -0.188 5.188 15 C -0.079 4.079 16 C -0.175 4.175 17 C 0.040 3.960 18 H 0.092 0.908 19 O -0.384 6.384 20 C -0.079 4.079 21 N -0.324 5.324 22 H 0.103 0.897 23 H 0.125 0.875 24 H 0.157 0.843 25 H 0.143 0.857 26 H 0.121 0.879 27 H 0.058 0.942 28 H 0.130 0.870 29 H 0.113 0.887 30 H 0.248 0.752 31 H 0.078 0.922 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.269 0.175 9.014 9.590 hybrid contribution 0.987 -2.271 0.191 2.483 sum -2.282 -2.096 9.205 9.712 Atomic orbital electron populations 1.70334 1.09270 1.34144 1.25299 1.28507 0.95692 1.07292 0.90236 0.82999 0.74728 0.69566 0.79108 1.19643 1.19132 1.17680 1.20796 1.04811 0.95443 1.34663 0.89699 1.18758 0.87983 0.93276 0.88952 1.21759 1.06466 0.93769 1.12305 1.21182 0.93593 0.98038 0.92671 1.20943 1.03322 0.95836 1.14863 1.20201 0.88189 0.90759 0.93330 1.61966 1.27028 1.17875 1.11965 1.23274 0.98081 1.02025 0.84521 1.23234 0.99414 0.94789 1.00060 1.22590 0.83294 0.95907 0.94196 0.90800 1.86554 1.24722 1.90269 1.36808 1.22551 0.99435 0.88573 0.97304 1.67998 1.14575 1.31463 1.18370 0.89675 0.87465 0.84348 0.85717 0.87852 0.94151 0.86962 0.88717 0.75225 0.92189 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.91 13.05 21.84 0.28 -43.62 16 2 C 0.01 0.31 5.23 85.29 0.45 0.75 16 3 Si 1.12 44.12 30.02 68.60 2.06 46.17 16 4 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 6 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 7 C -0.53 -29.35 9.00 23.46 0.21 -29.14 16 8 H 0.08 4.48 7.99 -2.91 -0.02 4.46 16 9 C 0.23 13.29 6.25 40.19 0.25 13.55 16 10 C -0.32 -16.26 9.83 22.87 0.22 -16.04 16 11 C -0.03 -1.37 10.15 22.39 0.23 -1.14 16 12 C -0.33 -14.64 9.43 22.73 0.21 -14.43 16 13 C 0.31 15.45 6.25 133.40 0.83 16.28 16 14 N -0.47 -19.92 5.30 -689.28 -3.65 -23.57 16 15 C 0.05 1.49 5.98 86.65 0.52 2.01 16 16 C -0.14 -3.32 6.80 31.80 0.22 -3.10 16 17 C 0.10 3.07 4.35 31.47 0.14 3.21 16 18 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 19 O -0.57 -16.55 13.25 -148.98 -1.97 -18.52 16 20 C 0.05 2.13 6.15 86.44 0.53 2.66 16 21 N -0.60 -33.57 5.48 -186.60 -1.02 -34.59 16 22 H 0.29 17.69 6.73 -92.71 -0.62 17.07 16 23 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 24 H 0.14 4.95 8.06 -2.91 -0.02 4.93 16 25 H 0.12 4.86 7.90 -2.91 -0.02 4.84 16 26 H 0.10 2.88 8.02 -2.39 -0.02 2.86 16 27 H 0.04 1.37 8.00 -2.39 -0.02 1.35 16 28 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.09 2.14 8.08 -2.39 -0.02 2.12 16 30 H 0.40 6.52 9.12 -74.06 -0.68 5.84 16 31 H 0.06 3.04 6.53 -2.39 -0.02 3.03 16 32 H 0.05 2.60 7.96 -2.39 -0.02 2.58 16 Total: -1.00 -68.91 270.56 0.10 -68.81 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.60 Total: 30.72 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 3.81 Total: -25.40 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -4.39 Total: -101.79 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.97 Total: -18.52 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.06 Total: 46.17 kcal Total: -68.91 0.10 -68.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116290772.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.146 kcal (2) G-P(sol) polarization free energy of solvation -68.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds