Wall clock time and date at job start Sun Mar 29 2020 22:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38273 * 119.54229 * 2 1 4 4 C 1.38509 * 119.23687 * 179.76917 * 3 2 1 5 5 C 1.50700 * 120.82144 * 180.22467 * 4 3 2 6 6 C 1.39285 * 118.35721 * 0.44454 * 4 3 2 7 7 N 1.39956 * 120.48464 * 179.80794 * 6 4 3 8 8 C 1.34769 * 119.99981 * 145.18453 * 7 6 4 9 9 O 1.21290 * 120.00316 * 4.40560 * 8 7 6 10 10 C 1.50697 * 120.00163 * 184.41025 * 8 7 6 11 11 C 1.50697 * 109.47501 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99988 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00508 * 180.02562 * 11 10 8 14 14 N 1.31510 * 120.00247 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99680 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47285 * 90.00175 * 15 13 11 17 17 H 1.48500 * 109.47103 * 210.00259 * 15 13 11 18 18 H 1.48503 * 109.47150 * 330.00041 * 15 13 11 19 19 C 1.38843 * 119.02539 * 359.52843 * 6 4 3 20 20 N 1.31822 * 120.66167 * 0.25804 * 19 6 4 21 21 H 1.09003 * 109.47228 * 270.02855 * 1 2 3 22 22 H 1.09001 * 109.47021 * 30.02623 * 1 2 3 23 23 H 1.08991 * 109.47093 * 150.02611 * 1 2 3 24 24 H 1.07999 * 120.38191 * 359.97438 * 3 2 1 25 25 H 1.08994 * 109.47198 * 270.22145 * 5 4 3 26 26 H 1.09001 * 109.47042 * 30.22595 * 5 4 3 27 27 H 1.09003 * 109.47072 * 150.22192 * 5 4 3 28 28 H 0.97000 * 119.99631 * 325.18122 * 7 6 4 29 29 H 1.08994 * 109.47229 * 300.00078 * 10 8 7 30 30 H 1.09003 * 109.46982 * 60.00014 * 10 8 7 31 31 H 0.97003 * 119.99977 * 179.97438 * 14 13 11 32 32 H 1.07996 * 119.66802 * 180.26889 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2030 0.0000 4 6 3.5738 1.1956 0.0049 5 6 4.3528 2.4856 0.0101 6 6 4.2288 -0.0336 0.0001 7 7 5.6271 -0.0930 0.0007 8 6 6.2593 -1.0817 0.6633 9 8 5.6174 -1.9647 1.1918 10 6 7.7639 -1.0903 0.7476 11 6 8.2160 -2.2917 1.5369 12 1 7.4868 -2.9806 1.9371 13 6 9.5606 -2.5117 1.7483 14 7 9.9552 -3.5605 2.4367 15 14 10.8220 -1.3199 1.0567 16 1 11.0936 -0.2531 2.0535 17 1 12.0802 -2.0495 0.7572 18 1 10.2948 -0.7096 -0.1902 19 6 3.4742 -1.1991 0.0007 20 7 2.1570 -1.1471 0.0006 21 1 -0.3634 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8901 -0.5134 24 1 1.6475 2.1375 -0.0004 25 1 4.5408 2.8007 -1.0162 26 1 3.7787 3.2546 0.5269 27 1 5.3024 2.3345 0.5236 28 1 6.1412 0.5775 -0.4759 29 1 8.1839 -1.1361 -0.2571 30 1 8.1052 -0.1812 1.2429 31 1 10.9012 -3.7154 2.5850 32 1 3.9714 -2.1578 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189241.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:41 Heat of formation + Delta-G solvation = -11.145755 kcal Electronic energy + Delta-G solvation = -15793.538355 eV Core-core repulsion = 13139.768216 eV Total energy + Delta-G solvation = -2653.770139 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65793 -38.72745 -35.20873 -33.18686 -32.96146 -31.83650 -29.82396 -27.72603 -26.82363 -23.86639 -22.75330 -20.86129 -19.97202 -17.42997 -17.19975 -16.42431 -15.60217 -15.45274 -14.67442 -14.37965 -14.18282 -13.76220 -13.40681 -13.27756 -12.98278 -12.70340 -12.29106 -12.26235 -12.22350 -11.75371 -11.67188 -10.91558 -10.70990 -10.32869 -10.07889 -9.42575 -9.36098 -9.22000 -8.98101 -8.65456 -7.91954 -6.10131 -4.11328 1.23717 1.33730 3.19763 3.25052 3.29478 3.31179 3.45844 3.93230 4.33659 4.54405 4.63458 4.77457 5.05646 5.19912 5.28618 5.34552 5.40562 5.50477 5.57426 5.70414 5.73733 5.94975 6.00989 6.14088 6.31688 6.44481 6.55429 6.76569 7.07335 7.40043 7.81741 8.19355 8.45167 8.79694 9.09010 9.46653 11.02614 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.045953 B = 0.005641 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.167612 B = 4962.185105 C = 5468.765977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.096 3.904 3 C -0.157 4.157 4 C -0.079 4.079 5 C -0.114 4.114 6 C 0.104 3.896 7 N -0.684 5.684 8 C 0.520 3.480 9 O -0.508 6.508 10 C -0.026 4.026 11 C -0.518 4.518 12 H 0.094 0.906 13 C 0.071 3.929 14 N -0.893 5.893 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.105 3.895 20 N -0.471 5.471 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.132 0.868 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.407 0.593 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.265 0.735 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.550 13.944 -7.623 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.042 4.042 3 C -0.177 4.177 4 C -0.089 4.089 5 C -0.171 4.171 6 C 0.006 3.994 7 N -0.331 5.331 8 C 0.311 3.689 9 O -0.380 6.380 10 C -0.065 4.065 11 C -0.556 4.556 12 H 0.112 0.888 13 C -0.131 4.131 14 N -0.531 5.531 15 Si 0.701 3.299 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.055 4.055 20 N -0.181 5.181 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.150 0.850 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.243 0.757 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -13.224 12.383 -7.119 19.465 hybrid contribution 1.614 1.756 -0.480 2.433 sum -11.609 14.138 -7.600 19.810 Atomic orbital electron populations 1.20620 0.89161 1.02970 1.02727 1.21211 0.96919 0.88483 0.97596 1.21594 0.93217 0.99116 1.03816 1.20140 0.94121 0.94387 1.00295 1.20732 1.00186 0.93585 1.02586 1.18827 0.85026 0.94218 1.01334 1.44006 1.03463 1.31871 1.53748 1.21781 0.92320 0.79429 0.75391 1.90596 1.67853 1.35340 1.44179 1.19703 0.86362 1.00679 0.99801 1.20954 0.93539 1.07791 1.33314 0.88835 1.24963 0.98120 0.95273 0.94768 1.69886 1.15929 1.27535 1.39797 0.86889 0.81554 0.81521 0.79888 1.20083 1.21000 1.19116 1.23170 0.88467 0.98659 0.95187 1.67584 1.09386 1.28959 1.12199 0.90814 0.91169 0.90721 0.85031 0.90737 0.90885 0.90972 0.75741 0.93133 0.93630 0.92452 0.80959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.17 36.00 0.37 -0.60 16 2 C 0.10 1.32 6.78 -82.57 -0.56 0.76 16 3 C -0.16 -1.91 9.44 -39.47 -0.37 -2.28 16 4 C -0.08 -1.04 5.93 -104.13 -0.62 -1.66 16 5 C -0.11 -1.09 9.57 36.01 0.34 -0.74 16 6 C 0.10 1.69 6.31 -83.53 -0.53 1.16 16 7 N -0.68 -11.06 4.81 -9.77 -0.05 -11.11 16 8 C 0.52 10.99 7.67 -10.99 -0.08 10.90 16 9 O -0.51 -12.65 12.90 5.55 0.07 -12.58 16 10 C -0.03 -0.58 4.53 -29.04 -0.13 -0.71 16 11 C -0.52 -14.75 9.48 -34.44 -0.33 -15.08 16 12 H 0.09 3.04 7.00 -52.48 -0.37 2.67 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.89 -27.32 13.96 55.43 0.77 -26.54 16 15 Si 0.87 20.27 27.47 -169.99 -4.67 15.60 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -5.67 6.54 56.52 0.37 -5.30 16 19 C 0.11 1.91 9.88 -17.33 -0.17 1.74 16 20 N -0.47 -8.05 10.26 -9.32 -0.10 -8.14 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.07 0.71 7.29 -51.93 -0.38 0.34 16 28 H 0.41 5.10 7.97 -40.82 -0.33 4.78 16 29 H 0.05 1.06 7.20 -51.93 -0.37 0.69 16 30 H 0.05 0.95 7.57 -51.93 -0.39 0.55 16 31 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.17 3.47 6.20 -52.49 -0.33 3.15 16 LS Contribution 275.58 15.07 4.15 4.15 Total: -1.00 -33.63 275.58 -5.85 -39.48 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -3.86 Total: 3.72 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.18 Total: -4.58 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.63 Total: -45.79 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.07 Total: -12.58 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.63 -5.85 -39.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189241.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.337 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds