Wall clock time and date at job start Sun Mar 29 2020 21:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34454 * 123.80062 * 2 1 4 4 O 1.21264 * 126.49016 * 359.97438 * 3 2 1 5 5 C 1.51513 * 107.01921 * 179.74100 * 3 2 1 6 6 C 1.50826 * 103.86980 * 0.35866 * 5 3 2 7 7 C 1.38519 * 123.79391 * 179.97438 * 2 1 3 8 8 N 1.33487 * 131.64409 * 0.04970 * 7 2 1 9 9 C 1.31692 * 120.91878 * 180.02562 * 8 7 2 10 10 N 1.31701 * 122.41190 * 359.95785 * 9 8 7 11 11 C 1.33493 * 120.49193 * 0.02562 * 10 9 8 12 12 N 1.38589 * 120.70492 * 180.02562 * 11 10 9 13 13 C 1.36938 * 119.99540 * 359.97432 * 12 11 10 14 14 H 1.07991 * 120.00360 * 0.02562 * 13 12 11 15 15 C 1.38844 * 119.99375 * 180.02562 * 13 12 11 16 16 N 1.31539 * 120.00396 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99655 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47035 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47069 * 120.00487 * 17 15 13 20 20 H 1.48506 * 109.46943 * 240.00032 * 17 15 13 21 21 H 1.09004 * 109.47106 * 270.02785 * 1 2 3 22 22 H 1.09002 * 109.46724 * 30.01853 * 1 2 3 23 23 H 1.08999 * 109.47651 * 150.02273 * 1 2 3 24 24 H 1.08999 * 110.60253 * 241.73631 * 5 3 2 25 25 H 1.08996 * 110.48817 * 118.93377 * 5 3 2 26 26 H 1.07999 * 118.79259 * 179.97438 * 9 8 7 27 27 H 0.96996 * 120.00127 * 179.97438 * 12 11 10 28 28 H 0.97002 * 119.99777 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2130 1.1173 0.0000 4 8 1.8040 2.2589 -0.0004 5 6 3.6636 0.6798 0.0065 6 6 3.5870 -0.8265 0.0009 7 6 2.2355 -1.1512 0.0005 8 7 1.8999 -2.4431 0.0002 9 6 2.8232 -3.3821 0.0014 10 7 4.1109 -3.1059 0.0020 11 6 4.5320 -1.8391 0.0020 12 7 5.8859 -1.5434 0.0022 13 6 6.8078 -2.5560 0.0028 14 1 6.4798 -3.5849 0.0028 15 6 8.1643 -2.2597 0.0035 16 7 8.5638 -1.0064 0.0041 17 14 9.4220 -3.6409 0.0037 18 1 8.7200 -4.9495 0.0024 19 1 10.2734 -3.5352 -1.2083 20 1 10.2723 -3.5359 1.2167 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8899 -0.5141 23 1 -0.3634 -0.8901 -0.5135 24 1 4.1669 1.0339 0.9062 25 1 4.1748 1.0404 -0.8860 26 1 2.5131 -4.4166 0.0015 27 1 6.1805 -0.6192 0.0018 28 1 9.5115 -0.7995 0.0049 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181985.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:19 Heat of formation + Delta-G solvation = 31.804269 kcal Electronic energy + Delta-G solvation = -15871.066987 eV Core-core repulsion = 13115.618957 eV Total energy + Delta-G solvation = -2755.448029 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23924 -38.92623 -36.36038 -35.55770 -32.93023 -32.01978 -30.63738 -27.67912 -26.57748 -24.92552 -22.39789 -22.27593 -19.86581 -18.44836 -17.56635 -16.62072 -16.16885 -16.12760 -14.68540 -14.54306 -14.06253 -13.78133 -13.46188 -13.43195 -13.27488 -13.23423 -12.23527 -12.14869 -11.75905 -11.74989 -11.08683 -10.72326 -10.47655 -10.23860 -10.13039 -9.62438 -9.17647 -8.21620 -8.15676 -7.54774 -6.80479 -4.01575 1.73434 2.18217 2.82945 2.85294 3.09892 3.10014 3.16139 3.89397 4.44650 4.58677 4.59536 4.95172 5.05688 5.07199 5.36444 5.50226 5.64160 5.76632 5.80818 5.82090 6.12852 6.34903 6.64756 6.86756 7.22329 7.34231 7.63879 7.94770 8.14099 8.52460 8.97769 9.01329 9.49441 10.34378 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.039741 B = 0.006938 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.390870 B = 4034.616630 C = 4718.487175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.538 5.538 3 C 0.535 3.465 4 O -0.513 6.513 5 C -0.086 4.086 6 C -0.353 4.353 7 C 0.408 3.592 8 N -0.627 5.627 9 C 0.361 3.639 10 N -0.582 5.582 11 C 0.405 3.595 12 N -0.501 5.501 13 C -0.289 4.289 14 H 0.120 0.880 15 C 0.022 3.978 16 N -0.882 5.882 17 Si 0.940 3.060 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.278 1.278 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.184 0.816 27 H 0.409 0.591 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 -0.477 -0.082 7.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.263 5.263 3 C 0.325 3.675 4 O -0.388 6.388 5 C -0.126 4.126 6 C -0.371 4.371 7 C 0.177 3.823 8 N -0.360 5.360 9 C 0.067 3.933 10 N -0.311 5.311 11 C 0.156 3.844 12 N -0.105 5.105 13 C -0.420 4.420 14 H 0.137 0.863 15 C -0.183 4.183 16 N -0.518 5.518 17 Si 0.765 3.235 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.204 1.204 21 H 0.080 0.920 22 H 0.095 0.905 23 H 0.103 0.897 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.201 0.799 27 H 0.246 0.754 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.397 -0.635 -0.083 7.425 hybrid contribution 0.931 0.619 0.020 1.118 sum -6.466 -0.016 -0.064 6.467 Atomic orbital electron populations 1.21751 0.77752 1.03709 1.02606 1.45366 1.07364 1.05122 1.68458 1.20761 0.89367 0.83372 0.74036 1.90724 1.79362 1.18744 1.50003 1.20581 0.93840 0.93182 1.05007 1.19804 0.94195 0.94871 1.28202 1.17898 0.86929 0.86813 0.90691 1.67452 1.39641 0.97546 1.31366 1.24078 0.83277 0.97432 0.88491 1.68193 1.17594 1.18839 1.26480 1.17216 0.84759 0.87356 0.95053 1.41005 1.00531 1.09967 1.59005 1.20152 0.85626 0.90172 1.46057 0.86268 1.25511 0.98444 0.97913 0.96443 1.69661 1.17802 1.17691 1.46683 0.85626 0.79474 0.80297 0.78054 1.18649 1.20392 1.20386 0.91986 0.90513 0.89720 0.87130 0.87161 0.79929 0.75416 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.87 59.85 0.65 1.77 15 2 N -0.54 -9.19 3.11 -122.50 -0.38 -9.57 15 3 C 0.53 9.44 8.24 -10.73 -0.09 9.35 15 4 O -0.51 -9.87 17.67 5.57 0.10 -9.77 15 5 C -0.09 -1.47 6.70 -28.57 -0.19 -1.66 15 6 C -0.35 -7.02 6.31 -104.18 -0.66 -7.67 15 7 C 0.41 7.81 7.73 -154.60 -1.20 6.62 15 8 N -0.63 -11.87 10.48 -13.90 -0.15 -12.02 15 9 C 0.36 6.70 12.24 -92.32 -1.13 5.57 15 10 N -0.58 -12.59 9.30 -14.01 -0.13 -12.72 15 11 C 0.41 8.96 7.44 -154.72 -1.15 7.81 15 12 N -0.50 -11.71 5.41 -11.16 -0.06 -11.77 15 13 C -0.29 -7.12 9.72 -15.05 -0.15 -7.27 15 14 H 0.12 2.98 7.12 -52.49 -0.37 2.61 15 15 C 0.02 0.54 5.50 -17.45 -0.10 0.44 15 16 N -0.88 -21.99 13.05 55.49 0.72 -21.27 15 17 Si 0.94 18.96 29.55 -169.99 -5.02 13.94 15 18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.08 0.94 7.95 -51.93 -0.41 0.53 15 23 H 0.08 1.06 8.12 -51.93 -0.42 0.64 15 24 H 0.11 1.77 8.14 -51.93 -0.42 1.34 15 25 H 0.11 1.76 8.14 -51.93 -0.42 1.34 15 26 H 0.18 2.64 8.06 -52.49 -0.42 2.22 15 27 H 0.41 9.41 7.74 -40.82 -0.32 9.09 15 28 H 0.28 6.56 8.31 -40.82 -0.34 6.22 15 LS Contribution 256.38 15.07 3.86 3.86 Total: -1.00 -27.85 256.38 -7.41 -35.26 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -2.35 Total: 9.11 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: -4.01 Total: 14.95 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: 0.01 Total: -67.35 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.10 Total: -9.77 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.85 -7.41 -35.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181985.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.066 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds