Wall clock time and date at job start Sun Mar 29 2020 21:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46804 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.66066 * 51.78664 * 12 11 10 14 14 C 1.54710 * 110.74565 * 174.99695 * 12 11 10 15 15 C 1.51644 * 101.92341 * 143.61058 * 14 12 11 16 16 C 1.37743 * 132.17995 * 164.60176 * 15 14 12 17 17 C 1.38348 * 119.98164 * 180.40358 * 16 15 14 18 18 C 1.38291 * 119.76756 * 359.93972 * 17 16 15 19 19 C 1.37934 * 120.34831 * 359.88176 * 18 17 16 20 20 C 1.38880 * 107.04083 * 344.62433 * 15 14 12 21 21 O 1.36142 * 111.23465 * 358.91802 * 20 15 14 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.08995 * 109.47224 * 300.00085 * 11 10 9 26 26 H 1.09001 * 109.47248 * 60.00362 * 11 10 9 27 27 H 1.08996 * 110.94415 * 261.76854 * 14 12 11 28 28 H 1.09000 * 110.93979 * 25.45479 * 14 12 11 29 29 H 1.08000 * 120.01015 * 0.35069 * 16 15 14 30 30 H 1.07999 * 120.12038 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.82732 * 179.85903 * 18 17 16 32 32 H 1.08004 * 119.87951 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 2.1795 -3.5854 -0.0101 11 6 1.5649 -4.8754 -0.0153 12 6 2.6478 -5.9563 -0.0207 13 1 3.3662 -5.7849 0.7809 14 6 2.0177 -7.3641 0.0997 15 6 2.9235 -8.1902 -0.7927 16 6 3.1023 -9.5496 -0.9244 17 6 4.0231 -10.0411 -1.8325 18 6 4.7603 -9.1633 -2.6061 19 6 4.5803 -7.8017 -2.4785 20 6 3.6532 -7.2990 -1.5687 21 8 3.3068 -6.0107 -1.2973 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 0.9449 -4.9861 0.8743 26 1 0.9445 -4.9787 -0.9056 27 1 2.0545 -7.7206 1.1290 28 1 0.9942 -7.3661 -0.2754 29 1 2.5244 -10.2316 -0.3183 30 1 4.1654 -11.1065 -1.9372 31 1 5.4810 -9.5459 -3.3136 32 1 5.1604 -7.1230 -3.0862 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205611049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:19 Heat of formation + Delta-G solvation = -58.021264 kcal Electronic energy + Delta-G solvation = -15521.940523 eV Core-core repulsion = 12833.844958 eV Total energy + Delta-G solvation = -2688.095565 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.05194 -37.61960 -36.45176 -32.98685 -32.58758 -30.24675 -30.00868 -27.37401 -25.34744 -22.45505 -22.32875 -21.62714 -21.39210 -17.46233 -16.74932 -16.56629 -16.07404 -15.23352 -15.14706 -14.63025 -14.20397 -14.04020 -13.41150 -13.20024 -13.00920 -12.89396 -12.23029 -11.78990 -11.68240 -11.49153 -11.19939 -10.89756 -10.81076 -10.71030 -10.46250 -10.03669 -9.11961 -8.95686 -8.88953 -8.22282 -8.09953 -6.12158 -4.13706 1.23138 1.35256 3.29500 3.34365 3.35892 3.42894 3.67873 4.21385 4.40626 4.47502 4.77556 4.95579 5.00799 5.19473 5.24616 5.27325 5.36846 5.54661 5.55575 5.61798 5.84149 5.88469 5.98633 6.17776 6.26780 6.39975 6.40909 6.64293 7.04339 7.30426 7.39044 7.78508 8.11962 8.51487 8.99238 9.51128 10.99513 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.057931 B = 0.004346 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.217266 B = 6440.599675 C = 6787.627076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.067 3.933 12 C 0.087 3.913 13 H 0.094 0.906 14 C -0.104 4.104 15 C -0.179 4.179 16 C -0.071 4.071 17 C -0.159 4.159 18 C -0.086 4.086 19 C -0.144 4.144 20 C 0.114 3.886 21 O -0.286 6.286 22 H 0.264 0.736 23 H 0.007 0.993 24 H 0.007 0.993 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.196 -19.098 -1.532 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.011 4.011 12 C 0.031 3.969 13 H 0.112 0.888 14 C -0.141 4.141 15 C -0.179 4.179 16 C -0.089 4.089 17 C -0.177 4.177 18 C -0.104 4.104 19 C -0.162 4.162 20 C 0.068 3.932 21 O -0.200 6.200 22 H 0.073 0.927 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.266 -18.712 -1.648 19.508 hybrid contribution -0.097 0.795 0.094 0.807 sum 5.169 -17.917 -1.554 18.712 Atomic orbital electron populations 1.69974 1.06119 1.27101 1.50628 1.24954 0.94995 0.99479 0.95083 0.86263 0.80059 0.82460 0.77627 1.19428 1.20796 1.20818 1.21100 0.94188 0.89253 1.50747 0.91395 1.20255 0.88749 0.83462 0.95530 1.87905 1.35366 1.12534 1.95212 1.22330 0.92957 0.85304 1.00529 1.23472 0.94638 0.94248 0.84533 0.88800 1.21788 0.99384 0.92630 1.00277 1.20833 1.00391 0.94432 1.02279 1.20278 0.97686 0.92998 0.97909 1.20970 0.98774 0.99599 0.98331 1.20848 0.98903 0.92000 0.98671 1.20315 0.99132 0.95565 1.01232 1.19778 0.93553 0.84424 0.95456 1.87042 1.73159 1.22977 1.36791 0.92679 0.97536 0.97495 0.92120 0.93229 0.88826 0.88894 0.85986 0.85755 0.85390 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.06 29.54 -169.99 -5.02 17.03 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -15.43 9.43 -34.44 -0.32 -15.75 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.19 5.41 5.69 36.01 0.20 5.61 16 10 O -0.39 -9.73 10.33 -35.23 -0.36 -10.09 16 11 C 0.07 1.25 5.61 37.16 0.21 1.46 16 12 C 0.09 1.41 3.91 -25.83 -0.10 1.31 16 13 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 14 C -0.10 -1.29 6.65 -26.52 -0.18 -1.47 16 15 C -0.18 -2.37 6.27 -104.10 -0.65 -3.02 16 16 C -0.07 -0.77 10.03 -39.72 -0.40 -1.17 16 17 C -0.16 -1.57 10.07 -39.52 -0.40 -1.97 16 18 C -0.09 -0.90 10.02 -39.67 -0.40 -1.30 16 19 C -0.14 -1.88 10.06 -39.30 -0.40 -2.27 16 20 C 0.11 1.76 7.04 -38.96 -0.27 1.48 16 21 O -0.29 -5.26 10.81 -20.19 -0.22 -5.48 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.07 7.92 -51.93 -0.41 0.66 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 280.64 15.07 4.23 4.23 Total: -1.00 -32.91 280.64 -7.62 -40.53 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: -4.18 Total: -4.35 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -2.80 Total: -15.54 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.58 Total: -15.58 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.91 -7.62 -40.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205611049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.487 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds